RNA id: TU913037


Basic Information

Item Value
RNA id TU913037
length 1998
lncRNA type read_through
GC content 0.43
exon number 2
gene id G802328
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39436366 ~ 39516038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATttaactcaggtgcatcctattttcaatgatcatccttgagatgtttttacaacttgattggagtcaacctgtttttcagcggcagggactgggagactagtcaggatcgagggaaagacgaacggagcaaagtacagagagatccttgattgaaaacctgctccagagtgctcaggacctcagactggggtgaaggttcaccttccaacaggacaacgaccctaagaacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatgttcttgagtggcccagccagagcccggacttgaacccgattaaacatctcaggagagacctgaaaatagctgtgcagtgacgctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactcctcaaatacaggtgtgccaagcttgtagcgtcataccaaagaagactcaaggatgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatatttatgtgaaTGTGAtcgtttaaaaaaaatttaaaatatgtttaaaatatatatataaaacctgtatgtgctttgtcattatggggtattgtgtgtagattgacgaggaaaatAATGATTACTGTGCTTTGTCATCTTGGAAGGCCTATAACTATTTTCACTGTGAGGTTTTAATAATGGGACAAACTGCTTTCTTGCCAAACTTAACTTCTCTAAAGCATGTCTGATTGTATTATCCTCTTTTCATTCTGTTTTTAACGTTGGGTACCTTGTATCACCTCTGTATTCATCATTTGCATTATTCTTATGGCTGTTATTATTATGATTAGAATTATGATTCATTATTATGCTCATTATGATATTTCCATTCCAACGATAAGGATCAAAGAGCAGAACGCTTTCTTTTAAAATGCCAGACGTAAGCTCAAGCTCATTGGTACCAACTGATCAACTGCAGCCAACTCACTCAGCGCTGTTccctcaccaccctacagtattcaAACACTGGCTCTAGACCTGCTGACACATACCCATTAGCTGTCGCTTTTGCATCAAACCCCAAGTGGTGCATATTCCCCAATCACGAAGGACTGAAGTGTTTACACGCAGATAAACTAATTATACACTGTACCTTTTTTTGAGCAAACACTACTTCAAGACTCGACTCAGTCAGGTGGAGAGCTGATCCCCTTCCTATCGGACTTCAGGGCAGAGAAACGGGACACAATCAGCAGTGTGAGCAGTATTTCCTACTTGAACTCAAGCTTAATTGAACAAGCCACTGGAGAATACAGTGTGAGCAGGAACTGTGCCTGATTGCCACATCTGAGTTTCACAGTATGTTATACATAGAGCAGgaagggtagagcgagagagccTGTGAAAGCTAATCTAAATCAGTTATTGACCGTAGCATTGACACAACACTGAGTTCATTTTGACTTTACGTTTCCTCATAACATCCTCAAAACACCCCAGTCATCGTTCCTCTCTCTACCATACTTAACTATGGCAACTACAGTAACAGTTGATCATGTTCGTACCAAAGCAAGCTAATACTGCCTCGTGCTATTGGTCCCTCCCAGTGCAGTGATATTTGGCCTTGAGCGTGTGGGACCGCCAGGCAACAGTAAAGGTCATGGGATCGATAAATGACATAGGTGACCAACTAAGAGTgattcacatagaaatataatacaTAGAATGGATGTGGTAAGTAAGATGATGCACGTTGTgtccattctatttctatgggctgTCCTGTCTTTGGGTTGGGTGGAGGTTGATTGTTGACTCTTGGGATGTTTTTAGGGGACAGGGGAGGAAGAGGGTTGTCCCAGTGCTACTGAAACAGTGTTTTGTTCAGGCCTAATGAACCCCTTTCGAAACACTTTcctttttgttagtttgttttctACCCCTGAGTTGAAGGACAAGAGTTGGGGACTTTGACAAAGAGAAAAATAACATTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913026 lncRNA upstream 20648 39415399 ~ 39415718 (+) False G802325
TU913030 lncRNA upstream 20719 39415399 ~ 39415647 (+) True G802325
TU913028 lncRNA upstream 21217 39414725 ~ 39415149 (+) False G802325
TU913010 lncRNA upstream 38273 39397878 ~ 39398093 (+) True G802317
TU913006 lncRNA upstream 45827 39390298 ~ 39390539 (+) True G802313
TU913103 lncRNA downstream 38149 39554187 ~ 39556665 (+) True G802392
TU913111 lncRNA downstream 42227 39558265 ~ 39562731 (+) True G802399
TU913503 lncRNA downstream 158975 39675013 ~ 39675349 (+) True G802764
TU913519 lncRNA downstream 200395 39716433 ~ 39716670 (+) True G802778
TU913552 lncRNA downstream 259429 39775467 ~ 39775699 (+) True G802811
XM_021615616.2 mRNA upstream 25167 39401035 ~ 39411199 (+) True ddx23
XM_021615615.2 mRNA upstream 53141 39375368 ~ 39383225 (+) True LOC110532026
XM_036987944.1 mRNA upstream 179740 39240179 ~ 39256626 (+) True LOC110532020
XM_036987943.1 mRNA upstream 198958 39111363 ~ 39237408 (+) False LOC110531165
XM_021615623.2 mRNA downstream 15421 39531459 ~ 39542666 (+) False g6pd
XM_021615621.2 mRNA downstream 15448 39531486 ~ 39542666 (+) False g6pd
XM_021615620.2 mRNA downstream 15450 39531488 ~ 39542666 (+) False g6pd
XM_021615624.2 mRNA downstream 15544 39531582 ~ 39542666 (+) False g6pd
XM_021615622.2 mRNA downstream 15594 39531632 ~ 39542666 (+) False g6pd
TU913019 other upstream 18906 39415875 ~ 39417460 (+) False G802324
TU913020 other upstream 18906 39415875 ~ 39417460 (+) False G802324
TU913022 other upstream 18906 39415875 ~ 39417460 (+) False G802324
TU913023 other upstream 18906 39415875 ~ 39417460 (+) False G802324
TU913024 other upstream 18906 39415875 ~ 39417460 (+) True G802324
TU913483 other downstream 123216 39639254 ~ 39640869 (+) True spryd4
TU913562 other downstream 273619 39789657 ~ 39790402 (+) True G802821
TU913563 other downstream 275879 39791917 ~ 39792333 (+) True G802822
TU913576 other downstream 294289 39810327 ~ 39812025 (+) False G802830
TU913578 other downstream 294289 39810327 ~ 39812025 (+) True G802830

Expression Profile