RNA id: TU913063



Basic Information


Item Value
RNA id TU913063
length 451
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G802353
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39447083 ~ 39469432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttgtgaacagcagttttcagttctttccacagattctcgattgtctggactttgacttggccattctaacacctggatatgtttatgtttgaagcattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcctagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatactgccaccaccatgtttgacagtggggatggtgtgttcagtgtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU913026 lncRNA upstream 31365 39415399 ~ 39415718 (+) False G802325
TU913030 lncRNA upstream 31436 39415399 ~ 39415647 (+) True G802325
TU913028 lncRNA upstream 31934 39414725 ~ 39415149 (+) False G802325
TU913010 lncRNA upstream 48990 39397878 ~ 39398093 (+) True G802317
TU913006 lncRNA upstream 56544 39390298 ~ 39390539 (+) True G802313
TU913040 lncRNA downstream 33068 39502500 ~ 39503569 (+) True LOC110532032
TU913103 lncRNA downstream 84755 39554187 ~ 39556665 (+) True G802392
TU913111 lncRNA downstream 88833 39558265 ~ 39562731 (+) True G802399
TU913503 lncRNA downstream 205581 39675013 ~ 39675349 (+) True G802764
TU913519 lncRNA downstream 247001 39716433 ~ 39716670 (+) True G802778
XM_021615616.2 mRNA upstream 35884 39401035 ~ 39411199 (+) True ddx23
XM_021615615.2 mRNA upstream 63858 39375368 ~ 39383225 (+) True LOC110532026
XM_036987944.1 mRNA upstream 190457 39240179 ~ 39256626 (+) True LOC110532020
XM_036987943.1 mRNA upstream 209675 39111363 ~ 39237408 (+) False LOC110531165
XR_002474798.2 mRNA downstream 31821 39501253 ~ 39503641 (+) False LOC110532032
XM_021615623.2 mRNA downstream 62027 39531459 ~ 39542666 (+) False g6pd
XM_021615621.2 mRNA downstream 62054 39531486 ~ 39542666 (+) False g6pd
XM_021615620.2 mRNA downstream 62056 39531488 ~ 39542666 (+) False g6pd
XM_021615624.2 mRNA downstream 62150 39531582 ~ 39542666 (+) False g6pd
TU913019 other upstream 29623 39415875 ~ 39417460 (+) False G802324
TU913483 other downstream 169822 39639254 ~ 39640869 (+) True spryd4
TU913562 other downstream 320225 39789657 ~ 39790402 (+) True G802821
TU913563 other downstream 322485 39791917 ~ 39792333 (+) True G802822
TU913576 other downstream 340895 39810327 ~ 39812025 (+) False G802830
TU913578 other downstream 340895 39810327 ~ 39812025 (+) True G802830

Expression Profile