RNA id: TU913747


Basic Information

Item Value
RNA id TU913747
length 514
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G802978
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40067912 ~ 40068425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTAGCTAGACATTTCACGATttcgggtgtgttcgtaaattcaatctagAGTGTCAGAGTGAGCTCTGGATGTTCGTAAATCCAAAACATTGTCAGATAGTCCATTTAGTAAATTCTGAGTGTAAGCTTTCGGatcgcacactggacgctctgacCGAGTAGATTTTGATCtcagcgttctgacctcacaaaggcagtcaagcacccccagctaactggctaacattggctagctactgcCAGACACATGAGAGaacactctgaccattttactcaccctggcagagctggttaggctgatttcatgttatccagagctttggtgactgtaactgtgctcctggcaacaatttaattatgctttgtttgctgacgtttactgacacccgCCATATTCAACGGGTCTGGAGCATACGCAAAtccatcagttattctgcactctggcacattgagtgctctgaaatcgaagTAGATAGACAGAATTAACTATGTAcattgagaacgcacaacga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913736 lncRNA upstream 8348 40032634 ~ 40059564 (+) True G802967
TU913735 lncRNA upstream 8525 40032362 ~ 40059387 (+) True G802966
TU913702 lncRNA upstream 62763 40004923 ~ 40005149 (+) True G802947
TU913700 lncRNA upstream 64899 40002798 ~ 40003013 (+) True G802945
TU913676 lncRNA upstream 105293 39961533 ~ 39962619 (+) True LOC110532054
TU913750 lncRNA downstream 3081 40071506 ~ 40071713 (+) True G802981
TU913765 lncRNA downstream 46614 40115039 ~ 40115538 (+) True G802996
TU913766 lncRNA downstream 48196 40116621 ~ 40116975 (+) True G802997
TU913767 lncRNA downstream 49164 40117589 ~ 40117828 (+) True G802998
TU913790 lncRNA downstream 101857 40170282 ~ 40173004 (+) True G803017
XM_021615658.2 mRNA upstream 4057 40056808 ~ 40063855 (+) True LOC110532057
XM_021615654.2 mRNA upstream 21359 40013096 ~ 40046553 (+) False LOC110532055
XM_021615655.2 mRNA upstream 21359 40013101 ~ 40046553 (+) True LOC110532055
XM_021615653.2 mRNA upstream 104926 39961471 ~ 39962986 (+) False LOC110532054
XM_021615650.2 mRNA upstream 121827 39939765 ~ 39946085 (+) True LOC110532052
XM_021615663.2 mRNA downstream 7427 40075852 ~ 40085818 (+) True LOC110532060
XM_036987969.1 mRNA downstream 17586 40086011 ~ 40090648 (+) False LOC110532058
XM_036987968.1 mRNA downstream 17677 40086102 ~ 40089385 (+) False LOC110532058
XM_036987966.1 mRNA downstream 17677 40086102 ~ 40090648 (+) False LOC110532058
XM_036987967.1 mRNA downstream 17680 40086105 ~ 40090648 (+) True LOC110532058
TU913576 other upstream 255887 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 255887 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 275579 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 277510 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 427043 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 318340 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 374471 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 399203 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 952511 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1366459 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile