RNA id: TU913790



Basic Information


Item Value
RNA id TU913790
length 361
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G803017
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40170282 ~ 40173004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTGACTGTAAAGTATCTGAGATCTTTGAGGGGATTGTGTGGATTGAGGATATTATTCTACATAGTGATGTACACCCAGACAACAAGTAAATGTAGTGAATATACCGGAGGGTGTGAATTTAAGGAATGCATTTCAAAGTGTCTAGTCACAGACGGAGCAGATTCTAATTGTAGCATTCTGTTTTCTAGGTGAAATTGAAAACCAGCGGTGTAACCCTTCATGGTTTGACTAAATGGGTGCCTCGACCTGGACCAATGGACCGCAAGGATCGGGAACCAGTGTGTCCAGTGCGCGGGCTCGCTATAGGTGAGCCCACAACGGTTTGGCGCAACGTGGCCCATCCTGCTCTCCTGAATCGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU913767 lncRNA upstream 52454 40117589 ~ 40117828 (+) True G802998
TU913766 lncRNA upstream 53307 40116621 ~ 40116975 (+) True G802997
TU913765 lncRNA upstream 54744 40115039 ~ 40115538 (+) True G802996
TU913750 lncRNA upstream 98569 40071506 ~ 40071713 (+) True G802981
TU913747 lncRNA upstream 101857 40067912 ~ 40068425 (+) True G802978
TU913799 lncRNA downstream 11037 40184041 ~ 40184930 (+) False G803026
TU913800 lncRNA downstream 11037 40184041 ~ 40189878 (+) True G803026
TU914152 lncRNA downstream 31906 40204910 ~ 40205256 (+) True G803324
TU914153 lncRNA downstream 32399 40205403 ~ 40205624 (+) True G803325
TU914232 lncRNA downstream 175721 40348725 ~ 40348955 (+) True G803393
XM_036987971.1 mRNA upstream 6136 40152702 ~ 40164146 (+) False mybl2a
XM_036987972.1 mRNA upstream 6136 40152702 ~ 40164146 (+) False mybl2a
XM_036987973.1 mRNA upstream 6136 40152702 ~ 40164146 (+) False mybl2a
XM_036987974.1 mRNA upstream 6136 40152702 ~ 40164146 (+) False mybl2a
XM_036987975.1 mRNA upstream 6136 40152702 ~ 40164146 (+) True mybl2a
XM_036987977.1 mRNA downstream 50186 40223190 ~ 40328855 (+) True LOC110531171
XM_021615676.2 mRNA downstream 185781 40358785 ~ 40371338 (+) True LOC110532067
XM_021615678.2 mRNA downstream 202268 40375272 ~ 40387059 (+) False LOC110532068
XM_021615677.2 mRNA downstream 202268 40375272 ~ 40393967 (+) False LOC110532068
XR_002474801.2 mRNA downstream 234808 40407812 ~ 40410397 (+) False LOC110532069
TU913576 other upstream 358257 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 358257 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 377949 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 379880 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 529413 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 213761 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 269892 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 294624 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 847932 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1261880 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile