RNA id: TU913800


Basic Information

Item Value
RNA id TU913800
length 1823
lncRNA type antisense_over
GC content 0.54
exon number 5
gene id G803026
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40184041 ~ 40189878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCATGTCCACACACTCACGCGGGGTGTGTCCAATgtggattttttgggggggggacaaaaattaCTCAAAAAAACATTCACTGCTTACTTAGACGACAGCAGTACTCATTACTTTCTCTGGGGTGGAGTGGGGGTACTGAACTTAAAAGGGGTCAAGGTTCAAAACCACATTGACAGTTATTATTATTTGATTCATACTTCTTATtctcagagagggagagcgggtgTGGCCAGAAGTGCTTCCCTGTTGAGGTTTCCATGACAATGGTGCCGTGGCAGCGGTAGTGGTCTACTTGGCGTTGGCGGAGCTGCTGAGCATCTTGCGGACGGCCTGCACGATGGCGTCGCGGTCGATGCCGAAGATCTTGAGGAGCTCAGTGGGTTTGCCGCTGCGGGGAACGTGGGCCACGGCCATACGGTGCACATTGAAGCCCGTCTCATTTACCACAGCTGAACACACGGCCTCTCCCAGGCCCCCCTCGTAGTAGTGGTCCTCCACTGTGATGATGCGTCCCCTGGTGGCCTTGGCGTGCTCGACGATGGTCTTGGAGTCCAGAGGCTTGATGGTGAAAGGGTCAATCACTCGAATGTTGATCCTCTCCTTCTTTAGCATTTCAGCAGCTGCCAGTGCCTCATGAAGGGTCACGCCCGCTCCGATCACCGTCACATGATCATCGCTGGTCTTGTACACAACCTTCGCCTGTCCCACATGAAAGTCCTCGTTGCTGTTGTAAAGAACAGTGTTCTCTGGGCGACTGGTTCTGATGAAACACACACCCTTCGTGTTGGCGGCCAGCTCCACAGCTTTCTCAGTGGACACGCCGTCGCTAGGGTAGAAAATGGTTGCCGTGGGAATGGCTCTGAACATGGCAATGTCTTCGAGGCCCATCTGAGAAGGACCATCCTctcctagaacacacacacacacgcacgtacacacacacacacgcgcgcgcgcgcgcaagTCAGACAGAACAACACTTGGCGTGTTTGGGGCTGCTGAAAGTGAAAGCTACAGGGCAGGCATGCGTTCAGTGGGGCGAGTCGGCGTGGGCATGCAATGTACCTGAGGAACCAAAAGGAAGCCTGGCCGCCCCGCCACCACCACTtccgtgacacagagagagagggggggagggagggaacgagtGCTGGCCGGTGCCACACTGATACATTAATAGATGGAAGGAAGATGTGAAGAAACAAAAGCAAAGTTCAGGATTCAGGAAATAATACAGGATTATACGACGCGAGGTCAACAACGAGGGAACGATTCAACCCACTGCAGGATTGTTACCAAAATGTTTGGTCGAAACCAACTGAAGCCAAAGGCCCTCTCCACCTAAACAGTTTTAGGGGAAGCACTGTGTGACAGTAAGCCAAGTCTTCTGCAGTGGGCTGAATCAGTCCCAGAGGAACAAGTGCTGAGAGCTACGTCAGGGTCACAGTGAGGAAGTCACAGGGGTCACTACACAGACAGTtcactaggggggggggggtcaaaggtCAGTGGGCGGACTGACCGATGGACACGCCGCAGTGGGAGCCACACAGGTTGATGTTGCTCTCGGAGATGGCGGCCATGCGAAGCTGGTCGTAGGCACGCGTGAAGAAGGTGGCGAAGGTGCTGGCGAACACCACGTTGCGGTCCCGCGTGGCACAGCCCACCGCAATGCTcacctgacagaggaggagagggaggaaagcggTGTTCATGATTACAAAGACCAGATAGAAGCCTGAGCAACTTGTGTTCTCACAGTCTGCCCAAAGTGCCTCAAGTCAATCTTTAGACACATAAGAAGGGAGCCAGCATCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913790 lncRNA upstream 11037 40170282 ~ 40173004 (+) True G803017
TU913767 lncRNA upstream 66213 40117589 ~ 40117828 (+) True G802998
TU913766 lncRNA upstream 67066 40116621 ~ 40116975 (+) True G802997
TU913765 lncRNA upstream 68503 40115039 ~ 40115538 (+) True G802996
TU913750 lncRNA upstream 112328 40071506 ~ 40071713 (+) True G802981
TU914152 lncRNA downstream 15032 40204910 ~ 40205256 (+) True G803324
TU914153 lncRNA downstream 15525 40205403 ~ 40205624 (+) True G803325
TU914232 lncRNA downstream 158847 40348725 ~ 40348955 (+) True G803393
TU914240 lncRNA downstream 176969 40366847 ~ 40367047 (+) True G803401
TU914241 lncRNA downstream 178936 40368814 ~ 40369045 (+) True G803402
XM_036987971.1 mRNA upstream 19895 40152702 ~ 40164146 (+) False mybl2a
XM_036987977.1 mRNA downstream 33312 40223190 ~ 40328855 (+) True LOC110531171
XM_021615676.2 mRNA downstream 168907 40358785 ~ 40371338 (+) True LOC110532067
XM_021615678.2 mRNA downstream 185394 40375272 ~ 40387059 (+) False LOC110532068
XM_021615677.2 mRNA downstream 185394 40375272 ~ 40393967 (+) False LOC110532068
XR_002474801.2 mRNA downstream 217934 40407812 ~ 40410397 (+) False LOC110532069
TU913576 other upstream 372016 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 372016 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 391708 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 393639 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 543172 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 196887 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 253018 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 277750 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 831058 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1245006 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile