RNA id: TU914152



Basic Information


Item Value
RNA id TU914152
length 347
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G803324
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40204910 ~ 40205256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctgttggggagttgcagtgatgagacaagatcgaaattggggagaaaaagggggtcaaatatatatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgttcacttaggaagcaacactgattgacaatacatttcacatgctgttgtgcaaatggaatagacaacagttggaaattataggcaattagcaggacacccccaataaaggagtggttctgcaggtggtgaccacagaccacttctcagttcctatacttcctggctgatgttttggtcacttttgaatgctggcggtgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU913800 lncRNA upstream 15032 40184041 ~ 40189878 (+) True G803026
TU913799 lncRNA upstream 19980 40184041 ~ 40184930 (+) False G803026
TU913790 lncRNA upstream 31906 40170282 ~ 40173004 (+) True G803017
TU913767 lncRNA upstream 87082 40117589 ~ 40117828 (+) True G802998
TU913766 lncRNA upstream 87935 40116621 ~ 40116975 (+) True G802997
TU914153 lncRNA downstream 147 40205403 ~ 40205624 (+) True G803325
TU914232 lncRNA downstream 143469 40348725 ~ 40348955 (+) True G803393
TU914240 lncRNA downstream 161591 40366847 ~ 40367047 (+) True G803401
TU914241 lncRNA downstream 163558 40368814 ~ 40369045 (+) True G803402
TU914185 lncRNA downstream 202713 40407969 ~ 40410296 (+) True LOC110532069
XM_036987971.1 mRNA upstream 40764 40152702 ~ 40164146 (+) False mybl2a
XM_036987977.1 mRNA downstream 17934 40223190 ~ 40328855 (+) True LOC110531171
XM_021615676.2 mRNA downstream 153529 40358785 ~ 40371338 (+) True LOC110532067
XM_021615678.2 mRNA downstream 170016 40375272 ~ 40387059 (+) False LOC110532068
XM_021615677.2 mRNA downstream 170016 40375272 ~ 40393967 (+) False LOC110532068
XR_002474801.2 mRNA downstream 202556 40407812 ~ 40410397 (+) False LOC110532069
TU913576 other upstream 392885 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 392885 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 412577 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 414508 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 564041 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 181509 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 237640 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 262372 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 815680 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1229628 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile