RNA id: TU914454



Basic Information


Item Value
RNA id TU914454
length 395
lncRNA type intronic
GC content 0.38
exon number 3
gene id G803591
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40751355 ~ 40751820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taaccatacctacatgtactatactacctcaatcagcccgactaaccagtgtctgtatatagccttgctatttctttacttaccatcacacacacacacctttttttcacactattggttagagcctgtaagtaagcatttcactgtaaggtctacaccggttgtaagtaagcatttcactgtaaggtctacaccggttgtaagtaagcatttcactgtaaggtctacaccggttgtattcggagcacgtgacaaataaacttttatttgatATTGATACACCActcaaaatgtaattaataacttcaccaggctcaaatgtctgcttttttatttaaaaaatgacttgtacccatctaccaataggtgcccttctttgcaaggcattggaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU914446 lncRNA upstream 5958 40745197 ~ 40745397 (+) True G803583
TU914437 lncRNA upstream 9846 40739758 ~ 40741509 (+) True G803576
TU914432 lncRNA upstream 18072 40732554 ~ 40733283 (+) True G803571
TU914426 lncRNA upstream 31124 40720010 ~ 40720231 (+) True G803566
TU914423 lncRNA upstream 33749 40717352 ~ 40717606 (+) True G803563
TU914455 lncRNA downstream 8676 40760496 ~ 40761045 (+) True G803592
TU914456 lncRNA downstream 10161 40761981 ~ 40762289 (+) True G803593
TU914458 lncRNA downstream 19667 40771487 ~ 40771980 (+) True G803595
TU914452 lncRNA downstream 24821 40776641 ~ 40778842 (+) True G803589
TU914449 lncRNA downstream 64181 40816001 ~ 40817492 (+) True G803586
XM_036987986.1 mRNA upstream 177099 40504652 ~ 40574256 (+) False LOC110532072
XM_036987987.1 mRNA upstream 177099 40547508 ~ 40574256 (+) True LOC110532072
XR_002474801.2 mRNA upstream 340958 40407812 ~ 40410397 (+) False LOC110532069
XM_021615677.2 mRNA upstream 357388 40375272 ~ 40393967 (+) False LOC110532068
XM_021615678.2 mRNA upstream 364296 40375272 ~ 40387059 (+) False LOC110532068
XR_002474802.2 mRNA downstream 14462 40766282 ~ 40768598 (+) True LOC110532075
XM_021615690.2 mRNA downstream 164290 40916110 ~ 40918983 (+) False LOC110532080
XM_021615697.2 mRNA downstream 329632 41081452 ~ 41087171 (+) True si:dkey-72l14.3
XM_036986945.1 mRNA downstream 500846 41252666 ~ 41363977 (+) True LOC110531178
XM_036988011.1 mRNA downstream 671778 41423598 ~ 41452922 (+) False LOC110532096
TU914302 other upstream 283353 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 301416 40442896 ~ 40449939 (+) True G803437
TU914248 other upstream 362303 40386765 ~ 40389052 (+) True LOC110532068
TU913576 other upstream 939330 39810327 ~ 39812025 (+) False G802830
TU914604 other downstream 269116 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 683064 41434884 ~ 41435423 (+) False LOC110532096
TU916102 other downstream 1270039 42021859 ~ 42024403 (+) True LOC110532114
TU916494 other downstream 1580273 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 1594356 42346176 ~ 42348786 (+) True G805600

Expression Profile