RNA id: TU914449


Basic Information

Item Value
RNA id TU914449
length 1426
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G803586
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40816001 ~ 40817492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATCACATCCGTTTCAAATGACCAACTAAGCATGATCGTATTCAGTCTGGGCCATATTAGGTGGAAGGCCTTATCAGGCAGTAACTTACGCTCGAAATCAGACTCGTCGGACCCGTCTTCGTCTCCATTTGACTCGGTTTGCATCGGCTCCCCATCAAACATCACTCCTTTCCCGAGCTTGACAGCAGCACCCGCCCCATCTTGGCTTCTGGTGTCCCGCAAGCGCGTGAAATATTGCACGGCGAATTCCACCAGGTCCGGTGGCCTCTGTCGAAGCACCTCCACCGTGTAGCCTTGCAGCAATTCCGTCAATCCCACCGGTATCTCGATACTCATGACTGTGTTTAGATGGCGCTACCTAACTACAAATATGTTCAGGTATACTGTGTTTTTcttacaaaaatataaatgtagctagctacgaATTCTATCAGTCCATGTGTAGCACGCTAGTTAGCTACTGTGAGATAGCTGACACTGGTAATAGCGTCAGAGAAACTGGGTTAGCTTGCTGACATTGATGAGCAGTTCACCGGAGAGGTTGCTTAGTTAAGCCAGCTAACACAATGTCCAAGCAAATAGTGACACTTCTTTTTGTCGAAGGGAGGTCGGTCTTGTGTAAAGAATGAAATATGACCAGTGACGTTAGCGTTAGTTTATGATATCTGACTGAGCTGTCAAGTTGGGTAAGTTAGCGTTAGCTAGATAGCTCGCTCGCTCGCTAGATGCTTTTATGACAGCTGACCCGTAAACGTTAGCACAAATGTTAACGACCGTTAGCTGGTTCCCTCGCTGGCCTCCCTGTTCTCTTTATTTCGCCTCCTCTTTTTCGCCCGTCTCCTTGCCAGGGTAGCGGCTCAACCCCTCCGGCTAATGGTATAACGGATCAATATCAACAGCACGGAATAATTgacctagctagatagctaactaatTATATCCAATCTGAGTTAAACTAGCTAATTTAGCATATAATTAATTATACTTTGGAGGGTGGGACTTGTGAATGTAAGTTAACTTTAGCTAACAGGTTTGTTCCGATTAAATAAACTAACTAGAACATATAATTAAATAGCCGAGGGCTGACTTAGTATTTATTATACGCATAAGTAACGGCGGTTATAGCTAATGGATCACGTTACTTTAGTTAGCTACCGGTAACTAAACTAGCCAACAAGCTGGCTAGCTAGAAGCGTCTGATGTTACGATTGCAGGCAGTTCAGACAATCCGAAACCGGTGTATCCCAAGCTCCTGTAAACAAGGAGCGTCAGGGACAACCTAGACGTTACCTTGAATCCAAATTACCCAGTGTTTCAAAAAAAATGTGTGGTATGTTGGTATCGTCACTTGTGATATTCGGTAAATCCGTTTCTGCCTACAGTTGAGGCtcttcttttttctttttcttgCTCCACCACACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU914452 lncRNA upstream 37159 40776641 ~ 40778842 (+) True G803589
TU914458 lncRNA upstream 44021 40771487 ~ 40771980 (+) True G803595
TU914456 lncRNA upstream 53712 40761981 ~ 40762289 (+) True G803593
TU914455 lncRNA upstream 54956 40760496 ~ 40761045 (+) True G803592
TU914454 lncRNA upstream 64181 40751355 ~ 40751820 (+) True G803591
TU914493 lncRNA downstream 47308 40864800 ~ 40866855 (+) True G803629
TU914466 lncRNA downstream 68986 40886478 ~ 40888179 (+) False G803603
TU914467 lncRNA downstream 68986 40886478 ~ 40888179 (+) True G803603
TU914508 lncRNA downstream 77063 40894555 ~ 40895734 (+) True G803644
TU914491 lncRNA downstream 98655 40916147 ~ 40917114 (+) True LOC110532080
XR_002474802.2 mRNA upstream 47403 40766282 ~ 40768598 (+) True LOC110532075
XM_036987986.1 mRNA upstream 241745 40504652 ~ 40574256 (+) False LOC110532072
XM_036987987.1 mRNA upstream 241745 40547508 ~ 40574256 (+) True LOC110532072
XR_002474801.2 mRNA upstream 405604 40407812 ~ 40410397 (+) False LOC110532069
XM_021615677.2 mRNA upstream 422034 40375272 ~ 40393967 (+) False LOC110532068
XM_021615690.2 mRNA downstream 98618 40916110 ~ 40918983 (+) False LOC110532080
XM_021615697.2 mRNA downstream 263960 41081452 ~ 41087171 (+) True si:dkey-72l14.3
XM_036986945.1 mRNA downstream 435174 41252666 ~ 41363977 (+) True LOC110531178
XM_036988011.1 mRNA downstream 606106 41423598 ~ 41452922 (+) False LOC110532096
XM_021615710.2 mRNA downstream 680819 41498311 ~ 41573943 (+) False soga1
TU914302 other upstream 347999 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 366062 40442896 ~ 40449939 (+) True G803437
TU914248 other upstream 426949 40386765 ~ 40389052 (+) True LOC110532068
TU913576 other upstream 1003976 39810327 ~ 39812025 (+) False G802830
TU914604 other downstream 203444 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 617392 41434884 ~ 41435423 (+) False LOC110532096
TU916102 other downstream 1204367 42021859 ~ 42024403 (+) True LOC110532114
TU916494 other downstream 1514601 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 1528684 42346176 ~ 42348786 (+) True G805600

Expression Profile