RNA id: TU915238



Basic Information


Item Value
RNA id TU915238
length 506
RNA type TUCP
GC content 0.51
exon number 2
gene id G804307
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40862589 ~ 40912358 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcacaactccaacaccatcattaagtttgccgatgacacaacagttgtaggcctgatcactgacaacaacgagacagcctatagggaggaggtcagagacctggccgtgtggtgcaaggacaacaacctctccctcaacatgatcaagacaaaggagaggattgtggactacaggaaaaagaggaccgagcacacccccattctcatcaatggggatgcagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaacaaactatcctggtccaaacacaccaaacacaccaaacctattcccctcaggagatTTGGCAtatgtcctcagatcctcaaaaagttctacagctgcaccatcactgggtccaagctttctgccatccaggacctctataccaggcggtgtcagaggaaggccctaaaaatggtcaaagactccagccacccagtcatcgactgttctctctgctatcgcacggcaagcggtatcggaC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU915201 lncRNA downstream 74691 40787523 ~ 40787898 (-) False G804273
TU915202 lncRNA downstream 74691 40787523 ~ 40787898 (-) True G804273
TU915127 lncRNA downstream 94005 40767109 ~ 40768584 (-) True G804206
TU915171 lncRNA downstream 95883 40766345 ~ 40766706 (-) True G804245
TU915169 lncRNA downstream 95974 40766345 ~ 40766615 (-) False G804245
TU915189 lncRNA upstream 5549 40917907 ~ 40918478 (-) True G804262
TU915179 lncRNA upstream 6422 40918780 ~ 40921278 (-) True LOC110531177
TU915173 lncRNA upstream 71046 40983404 ~ 40984266 (-) True G804247
TU915186 lncRNA upstream 96531 41008889 ~ 41009137 (-) True G804259
TU915196 lncRNA upstream 97693 41010051 ~ 41010825 (-) True G804269
XM_021615687.2 mRNA downstream 45041 40774165 ~ 40817548 (-) True prkar2aa
XM_021615686.2 mRNA downstream 45044 40774165 ~ 40817545 (-) False prkar2aa
XM_036986943.1 mRNA downstream 100151 40760552 ~ 40762438 (-) True LOC118965936
XM_021615684.2 mRNA downstream 103573 40745623 ~ 40759016 (-) True LOC110532074
XM_021615685.2 mRNA downstream 103578 40745623 ~ 40759011 (-) False LOC110532074
XM_036987990.1 mRNA upstream 6368 40918726 ~ 40972149 (-) False LOC110531177
XM_036987991.1 mRNA upstream 12257 40924615 ~ 40972151 (-) False LOC110531177
XM_021615692.2 mRNA upstream 73111 40985469 ~ 41000703 (-) True dalrd3
XM_036988001.1 mRNA upstream 101021 41013379 ~ 41024791 (-) False impdh2
XM_036988000.1 mRNA upstream 101021 41013379 ~ 41024793 (-) False impdh2
TU915049 other downstream 288639 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 412649 40395732 ~ 40449940 (-) False selenok
TU914915 other downstream 412649 40442837 ~ 40449940 (-) True selenok
TU914001 other downstream 894615 39967244 ~ 39967974 (-) True LOC110531168
TU914000 other downstream 899608 39961467 ~ 39962981 (-) False LOC110531168
TU915182 other upstream 72124 40984482 ~ 40985245 (-) True G804255
TU915509 other upstream 524672 41437030 ~ 41437971 (-) False G804543
TU915510 other upstream 524672 41437030 ~ 41437807 (-) True G804543
TU916512 other upstream 1215494 42127852 ~ 42139326 (-) True LOC110532119
TU917956 other upstream 2419572 43331930 ~ 43332703 (-) False G806724

Expression Profile