RNA id: TU914466


Basic Information

Item Value
RNA id TU914466
length 1582
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G803603
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40886478 ~ 40888179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTTCAATAAAGCTTTTATGGGAGACAACTTCTGTTTCCAAGTCTTCTAAAACACACCGCAGAATGAAAGACCTGACAGTATGGTCTCGTAGTTCAACAACATAACCGCAGTGGGCTATCAGCATGTGGACTGAAGTCATAACCTGTACAACCTTTCACTGACCGAGGTTGAGAAAAGCATCCAAATGTGCCCTCCTGAACTACATTGTCACAAGAGGGCGAGTCAGTTCGGTCCTTATTTATTTCTGTGTAGCACAAACCCACCCAGGCAATGCCAGTAATACAGTTGGCCTGCAATGGAAATTGAAACGATGATACAAACAACGAATGACAGTCAATTCTGTCTGggtgttctctctgctgccacatggcaagaggtaccggagcggcaagtctaggtccaagaggcttctaaacagccataagactatctatgcatagtcactttaattaactctacctacatgtactgtacatactacctcaaccaaTCGGTgacaccgcacattgactctgtacccgcacccccctgtatatattgttattttttactgctgctctttaattacttgttacttctatctcatatttttttaagtaaacctttcactgtaaggtctacagctgttgtattcggcgcatgtgactaatacaatttgatttgattgacatCAGCCGAGCTCACCCACTTCCCATGAGTGTCTGATCTCATTGGAGGAGGTGCAGGAGCGACGCCCAACCATTAAACCCCCACAGACACCCCTAATCGTGGCGCAGGGGGTGGTTGGATCTGGACATGTTTTAGAGATTGGAAGACAGGCACactgacagaggcagacagagagatggacagacggACTCCGGCTGGCTCCAATCCATCTGCTGTCTGCAGCTCAAAAGAAGACGTTGAACCACAGCGTTGGTGAAGGAGCTCAAAAGGAAAGCATTTTCATCGTCCTATCGCCGACGCCAGCTTGAGCTGGGAGTTCAGTCTACTGCGTATTCTGATTGAGGCAGGAATTCCACGGTGGCATTTTCCCATCCACTCCATGAGCTGCAGGCTGCACATCAACACTCACTCAGCTCTGTGTTGTGGTCCTACAGGAGCAGAAGAACAACATCAATGCAGAGGTAGAAAACAATCACAAAGCAGACAGACTAATTCTAACAGACACATTGGTAGACGTAGGACACGAGGTAGCGAGGCCAGTAGCAAAGCATATAGAAAAAGGGAACATATTCACAGCCATGGGAGGCGATATCTGGCAGTGTTGGACAGCGTGGTGCACTGACGGGAAGAGGCAGGACCTGGACAGAGTGTTTGGGACAAAGCCCTGGGCCTGCAGCTTGATCACCAGCCTGTCTACAGGACACAGGCAACACACAAGCACATTACCCTACAATTTGAAACTGACAAGCACATTACCCTACAATCTGAAACTGACATGCACATTACCCTACAATCTGAAACTGACATGCACATTACCCTACAATCTGAAACTGACATGCACATTACCCTACAATCTGAAACTGATTTCTAAAGCAACTGCAATCACATCTTACACCAAAAACAGTACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU914493 lncRNA upstream 19623 40864800 ~ 40866855 (+) True G803629
TU914449 lncRNA upstream 68986 40816001 ~ 40817492 (+) True G803586
TU914452 lncRNA upstream 107636 40776641 ~ 40778842 (+) True G803589
TU914458 lncRNA upstream 114498 40771487 ~ 40771980 (+) True G803595
TU914456 lncRNA upstream 124189 40761981 ~ 40762289 (+) True G803593
TU914508 lncRNA downstream 6376 40894555 ~ 40895734 (+) True G803644
TU914491 lncRNA downstream 27968 40916147 ~ 40917114 (+) True LOC110532080
TU914545 lncRNA downstream 62176 40950355 ~ 40950576 (+) True G803677
TU914546 lncRNA downstream 62606 40950785 ~ 40951022 (+) True G803678
TU914560 lncRNA downstream 88723 40976902 ~ 40977268 (+) True G803692
XR_002474802.2 mRNA upstream 117880 40766282 ~ 40768598 (+) True LOC110532075
XM_036987986.1 mRNA upstream 312222 40504652 ~ 40574256 (+) False LOC110532072
XM_036987987.1 mRNA upstream 312222 40547508 ~ 40574256 (+) True LOC110532072
XR_002474801.2 mRNA upstream 476081 40407812 ~ 40410397 (+) False LOC110532069
XM_021615677.2 mRNA upstream 492511 40375272 ~ 40393967 (+) False LOC110532068
XM_021615690.2 mRNA downstream 27931 40916110 ~ 40918983 (+) False LOC110532080
XM_021615697.2 mRNA downstream 193273 41081452 ~ 41087171 (+) True si:dkey-72l14.3
XM_036986945.1 mRNA downstream 364487 41252666 ~ 41363977 (+) True LOC110531178
XM_036988011.1 mRNA downstream 535419 41423598 ~ 41452922 (+) False LOC110532096
XM_021615710.2 mRNA downstream 610132 41498311 ~ 41573943 (+) False soga1
TU914302 other upstream 418476 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 436539 40442896 ~ 40449939 (+) True G803437
TU914248 other upstream 497426 40386765 ~ 40389052 (+) True LOC110532068
TU913576 other upstream 1074453 39810327 ~ 39812025 (+) False G802830
TU914604 other downstream 132757 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 546705 41434884 ~ 41435423 (+) False LOC110532096
TU916102 other downstream 1133680 42021859 ~ 42024403 (+) True LOC110532114
TU916494 other downstream 1443914 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 1457997 42346176 ~ 42348786 (+) True G805600

Expression Profile