RNA id: TU915182



Basic Information


Item Value
RNA id TU915182
length 764
RNA type TUCP
GC content 0.43
exon number 1
gene id G804255
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40984482 ~ 40985245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatggacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagcgtggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgtgctcgagctgttttgcaaggaggaatgggaaaaaaattcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggc

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU915173 lncRNA downstream 216 40983404 ~ 40984266 (-) True G804247
TU915179 lncRNA downstream 63204 40918780 ~ 40921278 (-) True LOC110531177
TU915189 lncRNA downstream 66004 40917907 ~ 40918478 (-) True G804262
TU915201 lncRNA downstream 196584 40787523 ~ 40787898 (-) False G804273
TU915202 lncRNA downstream 196584 40787523 ~ 40787898 (-) True G804273
TU915186 lncRNA upstream 23644 41008889 ~ 41009137 (-) True G804259
TU915196 lncRNA upstream 24806 41010051 ~ 41010825 (-) True G804269
TU915286 lncRNA upstream 50327 41035572 ~ 41035777 (-) True G804353
TU915287 lncRNA upstream 50575 41035820 ~ 41036083 (-) True G804354
TU915288 lncRNA upstream 51819 41037064 ~ 41037539 (-) True G804355
XM_036987991.1 mRNA downstream 12331 40924615 ~ 40972151 (-) False LOC110531177
XM_036987990.1 mRNA downstream 12333 40918726 ~ 40972149 (-) False LOC110531177
XM_036987992.1 mRNA downstream 68409 40904738 ~ 40916073 (-) False wdr6
XM_036987998.1 mRNA downstream 80302 40898024 ~ 40904180 (-) True LOC118966048
XM_036987994.1 mRNA downstream 86898 40886478 ~ 40897584 (-) True LOC110532079
XM_021615692.2 mRNA upstream 224 40985469 ~ 41000703 (-) True dalrd3
XM_036988001.1 mRNA upstream 28134 41013379 ~ 41024791 (-) False impdh2
XM_036988000.1 mRNA upstream 28134 41013379 ~ 41024793 (-) False impdh2
XM_036988002.1 mRNA upstream 28134 41013379 ~ 41024793 (-) True impdh2
XM_021615694.2 mRNA upstream 41005 41026250 ~ 41034402 (-) True arih2
TU915184 other downstream 68508 40908595 ~ 40915974 (-) True wdr6
TU915238 other downstream 72124 40862589 ~ 40912358 (-) True G804307
TU915185 other downstream 77610 40905372 ~ 40906872 (-) False wdr6
TU915049 other downstream 410532 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 534542 40395732 ~ 40449940 (-) False selenok
TU915509 other upstream 451785 41437030 ~ 41437971 (-) False G804543
TU915510 other upstream 451785 41437030 ~ 41437807 (-) True G804543
TU916512 other upstream 1142607 42127852 ~ 42139326 (-) True LOC110532119
TU917956 other upstream 2346685 43331930 ~ 43332703 (-) False G806724
TU918772 other upstream 2955321 43940566 ~ 44015456 (-) True prdm16

Expression Profile