RNA id: TU916660


Basic Information

Item Value
RNA id TU916660
length 2590
RNA type TUCP
GC content 0.41
exon number 2
gene id G805600
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42346176 ~ 42348786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAGTGAAAGAGTGTGAAAAAGGTACTATAAGGTTACTATAAAGGTATAGAGGTACGGTAATAGTGCAGGTTTAACATGGGACCAGCAGAGGGAATGAGCTTAGCACAGTGTACAGTGTTTAAGTTATTTTTAAACAcctaaaatgacaaaaaaaaagtaAATGTGCTCATATAGAGGTCACAGCTATATTTAGTTACAGTAGAAGCGTCCATTTTGGTTTCTTTTGTTTGCAAATGGCACGCACTCAGAGATGGCAAGCTCTGAGTGTATTTGTTGACAGCagcaaaaacgtttttgtatgatttttttgttgtcGTTACAAATCATATTTGTAGGATTGTCTTCCTTAATTTAGAAATTCGGGTCTTGTATagtgcattgccccccccccccccccacccccctgttGCGACAGGCCTATAAAACAAAGTAAAATAATAGTGTCTGGGGCTATCCTGCATGATCAATTAACATAGCTTTCCACACATGGACATAATTCCACATAATGCACACTATACCCAGCTGAGAAGCTATTGATAGAGAATAATACGATGAGGACAATATATCTGGGAAGAACTGCAGAAGAACATACCCCTATTTATCAAAATTGGAAATGAGTAACAGTATAACACTTTAATAACACCGTTGATAACTCCATTGCCAGCGGTAAATGGTCAAGTGTTTCTCATTAGTACCATATTCATACCTATTAAATGCTACCGTATGTGAGATGACCTATGGAATGACTGATGGTGATTTATCCAGGAAGTGCGGAGACAATGGAAGCATGCAAACACTATTGCACTCAAGGAACAGAGGGTTGTGTCATCCTGGTTTGACTAGTGTCTATTtatttgaatttaaaaaaaatgtgtttctaATCCCTGAACCTCAAGTACAGTATGTTATGGATGGAGTATAAATGTGTAAACGTGTGATATGTGCTGGCACAATATGAAAAAGAGGTATACCCTATTTCTcagtacaaaaaaaaaactaaatgacCTTTCATCCATTTCTTTAAAAAGTCCCCACTTTTCTCTGTGACGAATCATAAACACGTGTCCTAACTTTTGAAAAATGAATGGCAACGGTATATACATATGTCAATATGAACGCTGTGTATGACCGACCCCAGATCACGTGACAATTCACAGCTCCATCGAAGGTGATCATAGGTAGCAATAGAAAAACAAATCACAAAAGATCATTATAAAACCCATTTAAAAACAAACCAAACAACAACAGTGTTCCGTGAAGTCTTTTAAATACCAGCAGGCTCCCTTTGGAATCCTTTCCCACCTGGTTGGAGCTTCAGAGGCTGTCATTTTGTgcaagtacagtatagtacacctGGCTGCATAACCTATTGCAGCCATTTTGTATGTACCATAAATGGAAGGACAAGTGCTTTTTCATGACAGAGACAAAATATATATTCACACGAGATCCTTTGAACATAGAGGAGGACAAAGGGAAAGTGAAATCTAAACTTTGCACACAACACTTTTGTAATGGAAGAATTTATGGAAGTGCCCATCCTACTTCTTTATTAAGGTGcacatacaaatatttaaaaaacaaataccaACTGAGTCACCGAAACAAAGACTGCACGGAGCGGAACTCCAAAACAGTGAAAATGGCCGACATGGTTCAGTGGCTATGGCAGCCTGTGATTCccagaagagaaagagacaatgacATGCACAGTACAGTACTTTTATATTATGCTTCATTTGGGCTGTTGGAAGTAATGTGTGTTCAAAGTCTTTTTTCTTCTCAAGAGAACAGAAGTGAAGGTAGGTAGCAAACAGTAATATATAATCACAACAATTTTCAAACGGCCAAATGAGAGCATTATGCACAAGGACGGTAAGTTTGTTCTCACGGGACAGACTCTTCCCGAAGATGAGTCATTTCATTTCACATCCGTTAAGTCTATGGAACTGCATGGGAGTCTGACACTTGTCCTATTCACTATCCAGTACATCATAAGCTCCGTTCAGAGTACTGGTCCTACTGTTAAAAGTCACTGATACCCTCAGAATCTCAATGTGAAAGATGTGAGTAAAGTTATATGAAGTCTTGTCCCAACCTTCTCTTAATAGCCCTTTTAAAGGGCCGTCTGTTGATGAGTTTTAGTCTGGGGACCAGTAGAAATCATATCCAACCAAAAGACTGTAAACAATGTCATACTACAAAAACAAGGAGGGGCTGCAGCCGTGCAATCAACAGAGACAGACTGCAGTTGGAGACTGGACAAAATCTGGACAGAGTCTGGACAGTCACAGACTGAACCTAGGAGGGGCAGTGGTTGTGGACACGCTGAGCACGGCTGCAGACTGACCATAAAGTACAGGCTGCCGACTGTTGACTGAACTCATGGGAGTGTGGTCTAGAGAAGGGGGGCTGATGGGGATGGGGGTCACAGTCTGACAGGGAGACAAGGCTGGAGGTCCGGTCCAGTCCAGTGTCCTCCCCGTCTGGACATCAGAGGTTAGACCTCAACGGAGGTGATCTGATTCATCTGGGCCCGCATAGACTGGACACTGTTAAGGATCTTCTTCTGGTGGCCCACTAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916661 lncRNA upstream 337 42345601 ~ 42345839 (+) True G805601
TU916463 lncRNA upstream 55176 42289554 ~ 42291000 (+) True G805423
TU916462 lncRNA upstream 56628 42289290 ~ 42289548 (+) True G805422
TU916362 lncRNA upstream 128109 42157527 ~ 42218067 (+) True G805323
TU916387 lncRNA upstream 191677 42154291 ~ 42154499 (+) True G805348
TU916703 lncRNA downstream 49859 42398645 ~ 42398855 (+) True G805638
TU916705 lncRNA downstream 52528 42401314 ~ 42401631 (+) True G805640
TU916742 lncRNA downstream 108844 42457630 ~ 42457832 (+) True G805673
TU916767 lncRNA downstream 148075 42496861 ~ 42519512 (+) True glut1b
TU916764 lncRNA downstream 183596 42532382 ~ 42534870 (+) False G805694
XM_021615744.2 mRNA upstream 99750 42237344 ~ 42246426 (+) True LOC110532123
XM_021615741.2 mRNA upstream 109537 42209835 ~ 42236639 (+) False LOC110532122
XM_021615740.2 mRNA upstream 109537 42209837 ~ 42236639 (+) True LOC110532122
XR_005053251.1 mRNA upstream 166855 42160412 ~ 42179321 (+) False LOC118966050
XM_021615752.2 mRNA downstream 76296 42425082 ~ 42431053 (+) True LOC110532129
XM_021617145.2 mRNA downstream 168360 42517146 ~ 42529048 (+) False glut1b
XM_021615761.2 mRNA downstream 192235 42541021 ~ 42546531 (+) True trappc6b
XM_021615760.2 mRNA downstream 198059 42546845 ~ 42556493 (+) False tpx2
XM_021615759.2 mRNA downstream 198060 42546846 ~ 42556493 (+) True tpx2
TU916494 other upstream 13738 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 321773 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 910753 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1324674 41020936 ~ 41021502 (+) True G803728
TU914302 other upstream 1878174 40467628 ~ 40468002 (+) True G803457
TU919016 other downstream 1846929 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 2093876 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3785945 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5633215 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 6196668 48545454 ~ 48570593 (+) True G812688

Expression Profile