RNA id: TU916858


Basic Information

Item Value
RNA id TU916858
length 314
lncRNA type intronic
GC content 0.38
exon number 2
gene id G805779
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42661815 ~ 42664451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAAAATGTTCACTAAAACACAACACACGAGAATTATCCAACAACAAAATGATATCTACACATTTAAAATCATTATTTTATGGTAAGACCACCAGTGCTGTCAGTATGGTACACACAGGTAAAATGGTACACACAGGTGACGGTAACATTAGTTTGAAAAAAGTGgcacaaatttgtttacatccctgttagtgagcatttctcctttgccaagataatctctctacttgacaggtgtggcataccaagaagctgattaaacagcatgatcattacacaggtgcatcttgtgctggggacaataaaaggcca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916827 lncRNA upstream 46615 42614860 ~ 42615200 (+) True G805749
TU916765 lncRNA upstream 82316 42532382 ~ 42579499 (+) True G805694
TU916764 lncRNA upstream 126945 42532382 ~ 42534870 (+) False G805694
TU916767 lncRNA upstream 142303 42496861 ~ 42519512 (+) True glut1b
TU916742 lncRNA upstream 203983 42457630 ~ 42457832 (+) True G805673
TU916860 lncRNA downstream 1318 42665769 ~ 42665983 (+) True G805781
TU916865 lncRNA downstream 13085 42677536 ~ 42677836 (+) True G805786
TU916867 lncRNA downstream 14693 42679144 ~ 42679349 (+) True G805788
TU917305 lncRNA downstream 220234 42884685 ~ 42885267 (+) True G806141
TU917415 lncRNA downstream 255081 42919532 ~ 42920390 (+) True G806227
XM_036988051.1 mRNA upstream 65118 42571812 ~ 42596697 (+) False LOC110532136
XM_036988052.1 mRNA upstream 65118 42571812 ~ 42596697 (+) False LOC110532136
XM_036988053.1 mRNA upstream 65118 42571813 ~ 42596697 (+) True LOC110532136
XR_002474810.2 mRNA upstream 96481 42563408 ~ 42565334 (+) True LOC110532135
XM_036988050.1 mRNA upstream 97222 42563408 ~ 42564593 (+) False LOC110532135
XM_021615779.2 mRNA downstream 25842 42690293 ~ 42695335 (+) False LOC110532140
XM_021615778.2 mRNA downstream 25843 42690294 ~ 42695335 (+) True LOC110532140
XM_021615780.2 mRNA downstream 34500 42698951 ~ 42712719 (+) False foxp3-1
XM_036986931.1 mRNA downstream 34500 42698951 ~ 42742383 (+) False foxp3-1
XM_021615781.2 mRNA downstream 34694 42699145 ~ 42712719 (+) False foxp3-1
TU916660 other upstream 313029 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 329377 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 637412 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1226392 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1640313 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1531264 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1778211 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3470280 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5317550 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5881003 48545454 ~ 48570593 (+) True G812688

Expression Profile