RNA id: TU917415


Basic Information

Item Value
RNA id TU917415
length 318
lncRNA type intronic
GC content 0.53
exon number 2
gene id G806227
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42919532 ~ 42920390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatcacagactacaaagctcagcgttcaacaccatagtgccctcaaagctcatcacaaagctaaggaccctgggtctaaacacatccctctgcaactggatcctggacttcctgatgggccgcccccaggtggtaagggtaggtaacaacacatccgccatgccgATCCTTTACATGGggggccctcaggggtgcgtgctcagtcccctcctgtactccctgttcaatcatgactgcatggccaggcatgactccaacaccattaagtttgcagatggcacaacagtggtaggcctgatcaccaaaaacaacgagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917305 lncRNA upstream 34265 42884685 ~ 42885267 (+) True G806141
TU916867 lncRNA upstream 240183 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 241696 42677536 ~ 42677836 (+) True G805786
TU916860 lncRNA upstream 253549 42665769 ~ 42665983 (+) True G805781
TU916858 lncRNA upstream 255081 42661815 ~ 42664451 (+) True G805779
TU917434 lncRNA downstream 49385 42969775 ~ 42970005 (+) True G806243
TU917435 lncRNA downstream 50123 42970513 ~ 42970739 (+) True G806244
TU917436 lncRNA downstream 50433 42970823 ~ 42971089 (+) True G806245
TU917437 lncRNA downstream 51863 42972253 ~ 42972528 (+) True G806246
TU917514 lncRNA downstream 164944 43085334 ~ 43085625 (+) True G806318
XM_021615790.2 mRNA upstream 7845 42903096 ~ 42911687 (+) True LOC110532147
XM_021615788.2 mRNA upstream 52230 42753276 ~ 42867302 (+) False LOC110532144
XM_036988058.1 mRNA upstream 52230 42753276 ~ 42867302 (+) False LOC110532144
XM_036988059.1 mRNA upstream 52230 42753276 ~ 42867302 (+) False LOC110532144
XM_036988061.1 mRNA upstream 52230 42810941 ~ 42867302 (+) True LOC110532144
XM_036988062.1 mRNA downstream 14874 42935264 ~ 42963028 (+) False LOC110532149
XM_021615792.2 mRNA downstream 20960 42941350 ~ 42963028 (+) False LOC110532149
XM_021615793.2 mRNA downstream 20960 42941350 ~ 42963028 (+) True LOC110532149
XM_021614416.2 mRNA downstream 345127 43265517 ~ 43275006 (+) True LOC110531181
XM_021614372.1 mRNA downstream 365451 43285841 ~ 43287979 (+) False taf10
TU916660 other upstream 570746 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 587094 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 895129 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1484109 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1898030 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1275325 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1522272 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3214341 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5061611 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5625064 48545454 ~ 48570593 (+) True G812688

Expression Profile