RNA id: TU917435


Basic Information

Item Value
RNA id TU917435
length 227
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G806244
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42970513 ~ 42970739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggaggtagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917434 lncRNA upstream 508 42969775 ~ 42970005 (+) True G806243
TU917415 lncRNA upstream 50123 42919532 ~ 42920390 (+) True G806227
TU917305 lncRNA upstream 85246 42884685 ~ 42885267 (+) True G806141
TU916867 lncRNA upstream 291164 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 292677 42677536 ~ 42677836 (+) True G805786
TU917436 lncRNA downstream 84 42970823 ~ 42971089 (+) True G806245
TU917437 lncRNA downstream 1514 42972253 ~ 42972528 (+) True G806246
TU917514 lncRNA downstream 114595 43085334 ~ 43085625 (+) True G806318
TU917518 lncRNA downstream 118752 43089491 ~ 43089749 (+) True G806322
TU917530 lncRNA downstream 145503 43116242 ~ 43116456 (+) True G806334
XM_036988062.1 mRNA upstream 7485 42935264 ~ 42963028 (+) False LOC110532149
XM_021615792.2 mRNA upstream 7485 42941350 ~ 42963028 (+) False LOC110532149
XM_021615793.2 mRNA upstream 7485 42941350 ~ 42963028 (+) True LOC110532149
XM_021615791.2 mRNA upstream 39523 42912383 ~ 42930990 (+) True LOC110532148
XM_021615790.2 mRNA upstream 58826 42903096 ~ 42911687 (+) True LOC110532147
XM_021614416.2 mRNA downstream 294778 43265517 ~ 43275006 (+) True LOC110531181
XM_021614372.1 mRNA downstream 315102 43285841 ~ 43287979 (+) False taf10
XM_021614374.1 mRNA downstream 315102 43285841 ~ 43287979 (+) False taf10
XM_036986925.1 mRNA downstream 315114 43285853 ~ 43287979 (+) False taf10
NM_001165093.2 mRNA downstream 315396 43286135 ~ 43287969 (+) True taf10
TU916660 other upstream 621727 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 638075 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 946110 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1535090 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1949011 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1224976 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1471923 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3163992 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5011262 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5574715 48545454 ~ 48570593 (+) True G812688

Expression Profile