RNA id: TU917436


Basic Information

Item Value
RNA id TU917436
length 267
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G806245
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42970823 ~ 42971089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatgtgattttctggattttttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacacgcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactctatgTATGATGAAGACTTTATCTACATTTCTCATCTTTGTAAAAGCGGGCTCATTCGAGATTTGAACCAGAGACCAATCGCActctaagcgagaatcatacacAGGGATAAAGGAACCCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917435 lncRNA upstream 84 42970513 ~ 42970739 (+) True G806244
TU917434 lncRNA upstream 818 42969775 ~ 42970005 (+) True G806243
TU917415 lncRNA upstream 50433 42919532 ~ 42920390 (+) True G806227
TU917305 lncRNA upstream 85556 42884685 ~ 42885267 (+) True G806141
TU916867 lncRNA upstream 291474 42679144 ~ 42679349 (+) True G805788
TU917437 lncRNA downstream 1164 42972253 ~ 42972528 (+) True G806246
TU917514 lncRNA downstream 114245 43085334 ~ 43085625 (+) True G806318
TU917518 lncRNA downstream 118402 43089491 ~ 43089749 (+) True G806322
TU917530 lncRNA downstream 145153 43116242 ~ 43116456 (+) True G806334
TU917599 lncRNA downstream 250995 43222084 ~ 43222295 (+) True G806399
XM_036988062.1 mRNA upstream 7795 42935264 ~ 42963028 (+) False LOC110532149
XM_021615792.2 mRNA upstream 7795 42941350 ~ 42963028 (+) False LOC110532149
XM_021615793.2 mRNA upstream 7795 42941350 ~ 42963028 (+) True LOC110532149
XM_021615791.2 mRNA upstream 39833 42912383 ~ 42930990 (+) True LOC110532148
XM_021615790.2 mRNA upstream 59136 42903096 ~ 42911687 (+) True LOC110532147
XM_021614416.2 mRNA downstream 294428 43265517 ~ 43275006 (+) True LOC110531181
XM_021614372.1 mRNA downstream 314752 43285841 ~ 43287979 (+) False taf10
XM_021614374.1 mRNA downstream 314752 43285841 ~ 43287979 (+) False taf10
XM_036986925.1 mRNA downstream 314764 43285853 ~ 43287979 (+) False taf10
NM_001165093.2 mRNA downstream 315046 43286135 ~ 43287969 (+) True taf10
TU916660 other upstream 622037 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 638385 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 946420 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1535400 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1949321 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1224626 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1471573 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3163642 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5010912 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5574365 48545454 ~ 48570593 (+) True G812688

Expression Profile