RNA id: TU917609


Basic Information

Item Value
RNA id TU917609
length 3042
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G806403
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43232869 ~ 43236516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCACTTTTAAATACTGTAGAGAACTACCCATGAAATGACAACACTTTTTAAAGCAGAATGTAACCATGTCTGCTGTGGGACAAACTTCAACGTCTGTTGATGTAACAAGTATCATATCATGTAAACAGTTTTCTGAACTTCAGAATGAAAGGTAACAACTCTCGTTTACAGCACCtccatagcccccccccccccccccccaaaaaaaacgatGTAAATACCCCATATCCATTTGAAATAATATAGTTTGGTAATTGAAGTCATGAAATTGGCTAATCTAAATGGTTATCAATCTCATGCACTATCccttaaaataaatgtatgctgTAATACACAATTGTACAAACTACAAAGTCACCATACATACAGTCCTTAAAAAATACTATAATGAATTATATTCCATGTTAATTGCATTGATCATATTAAGTAGCCCTACCAACTCATAACAATTTAAGTACAGATATAAATCCATAGTATTTACCTTATCATTGGGCGGGAAATGACTGGATAAGGAAGGGTAACCAATACAACTAATATCACACCCTCATTCTATCTCCCTTTAATATAGGCACTTTTCAAATACATTTACAAAGAAAATACTGTGAGGTGAAATCAAGAGTTAAACTTGGCCAAATTGTGATAATATAAATAATGTTGAATGAAAAAAGTAGATACAATTATGAGAGAGAGACTTATTTATAGAATCAAAAAATCCACAACATCCACTTTGTGTAATACTTGAAAACAGACCAGCTGTTCGAAATGGAGGAGCGACCCAATCTCCATTCATTGTTAAAGGCTCTgtgtttttcctgtgttttatcaaCTCAAAAAAAACTGATTGGATTGAATCAACTcaaaaaactgattggatttttaaagtcatcaatgtaaaggatttttttttttacccacctTTTAACCCAAACCCATGACACAGTGAAATGTTTAGTTGTTTAGTAAAATGTTTAgtataaaaatggctgcattgggccttttaaTGGGCCTTACTATCTCTGACTTTGTTTAGGAAACATTGACTTACTGGGATAAGTGGTTGTCCCacatagctatcttaagatgtaaaagttgctctggataagagcatctgctaaatgaataaaaatataaCATTTCTGAGTCAAGGCCATCCACTGTAAAAATGTGTCAGGTAATCCAATAGGATGCCTACTAGGGGGGAAATCTTTGTGACGTCCAACTCTGGTCATACTGGGTCATATTCATCAGTGCACACACTAGCAAAGCGTTTACCAACAGAAAACGAAAATgaatgtttcttattggacaagttcaggtagtccctccctgtttcggtCGGGTTTCTTCCATTTGGTGACTAGTTAATACGACTCCGGCTGAAAAGGGACGATTTCTATACATATTTTTTGTGAACAGCTAATTAGTGGGTATATACTCCCTAGACTTGGAATATTATAAATAGACCTTTCCCCACATTGAGTAGAACATTTTACATTAGTTGATACATAACCATGAACAGTAAGGACCAACTAGACCTAGATCGATTAGTTTAAAACTAAACATGTCTAGTAAACCGATACCTTCAAATTAATCCCTCAACAGATTGGTCTTTCAACAGCAAAATAACGTACAACAAATGTTTCACTTGCATGTCTTCAGTTAACCCATACCATTTAACAAAACACTACTCACAGAGCACAACAAAAAACACCTTATACCAATCCATCACACTGTTTTCTGTTTgaatacagtgacagtacagaTCTGACACTTGAAGCCTCCAGGCATCTATGGTTTATCTTTGCGAAAATTCTGTTTGTTGCATCAAGTGAGGTGGGAAAAGTTTTAGTGGTAGCACCCTAGACTGAATGACTAAGGGTTCGtcccgaaatggcaccctatttccacTATAATTAAAGATGCACATTAGTGTGTGGGGGGTCAGTCTTCAAGCTTTCCGCAATGCTGAAGCTCTATATGATGACAGGAGGTTTCTGCCTGTTCTGGCAACCCCACTCTGAGCTGGGAGTGTTGCTGGACACTGTCTGCCTCCTTCTCCCTCAAGAACCTTTCTAACCTGTCCATGTAGGATGGCCGCCGGGGTAGGAGGAAATAGTGCGTGGCGCTGGCTTTCCTGCCATCCTCCATGATAGGCACGATACAGGGGGAGCGTGGGCCCACCAAGGGCCCAGTGGACCCCTCCCTATGCTGCTGTTGTGGCCTCTGGAGGCCCTTGCTGACATATTTGGGGTTGGGGGCGAAACTCTGCGTAGGGGGCATCACCCCATTCACGTATATAGGTAGGCTCTTGGGACTAGGGGTGCAACAGGAGCCACAAGGGGGCGCTATCGGTTTCCTGGGAGGGACTTTGGGAGGCTTGTCCTTGTCTTGGTCCTCGGTGACAGACCAACGGTGGCAGTTGGCAGTCTTGGAGGGGCGTGGGGGGATGGGGATGCGGGGAGGAACTTCAGGCTTGTCCAGCTGGGGGTTGCCCCTGTAGctgccatggtggtggtggtgaaggtgGCACGACTGGCGCAGGCCAGAGGGCTTGAAGGAGCTTGCAGGGCCCGAGTGGGAGCGCCGCAACTTGGACCATTGGGGCCGATCTGGTTGCTTACTAGAAATGTCCCTCACTGCTACCACCACGGCCCCTGGCCCTCTCTGTCCCCCAAACTGGGCCTGCTGCTCCTGGGTTCCACTTTGGGCTCCACCCTTAGCCGAGCCGCTAGCCCCGGGGGGCCCCTCAAGGTAGGCATAGTTGACCTGGCCACAGCCCCTGAAGCTTCGTCGTCCGGTGGCGCCATAGTGGAGGGCCAGGGCATTCGTGGAGCAGCGCTGGGGAAGTAGGTGCTGCCTCTCGTCGATGAAGAATTCCACCTCGCTCTCCGCTGCCTCATCTGAGGAGTTATcctctgggtcagggagagggggcaggggcTTGGGGCCGCAGGACGGACTCTGCTCATAAACTGATAGTCTCTGGAAGGAGGGGACCACCTGGTCCCCCTCAGGAGGGCGGGGCCTGGTGGAGTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917600 lncRNA upstream 4006 43228636 ~ 43228927 (+) True G806400
TU917599 lncRNA upstream 10638 43222084 ~ 43222295 (+) True G806399
TU917530 lncRNA upstream 116477 43116242 ~ 43116456 (+) True G806334
TU917518 lncRNA upstream 143184 43089491 ~ 43089749 (+) True G806322
TU917514 lncRNA upstream 147308 43085334 ~ 43085625 (+) True G806318
TU917612 lncRNA downstream 1879 43237853 ~ 43238686 (+) True G806404
TU917613 lncRNA downstream 2728 43238702 ~ 43238919 (+) True G806405
TU917614 lncRNA downstream 3642 43239616 ~ 43239824 (+) True G806406
TU917615 lncRNA downstream 4289 43240263 ~ 43240623 (+) True G806407
TU917670 lncRNA downstream 84077 43320051 ~ 43322678 (+) True G806458
XM_036988062.1 mRNA upstream 269905 42935264 ~ 42963028 (+) False LOC110532149
XM_021615792.2 mRNA upstream 269905 42941350 ~ 42963028 (+) False LOC110532149
XM_021615793.2 mRNA upstream 269905 42941350 ~ 42963028 (+) True LOC110532149
XM_021615791.2 mRNA upstream 301943 42912383 ~ 42930990 (+) True LOC110532148
XM_021615790.2 mRNA upstream 321246 42903096 ~ 42911687 (+) True LOC110532147
XM_021614416.2 mRNA downstream 29543 43265517 ~ 43275006 (+) True LOC110531181
XM_021614372.1 mRNA downstream 49867 43285841 ~ 43287979 (+) False taf10
XM_021614374.1 mRNA downstream 49867 43285841 ~ 43287979 (+) False taf10
XM_036986925.1 mRNA downstream 49879 43285853 ~ 43287979 (+) False taf10
NM_001165093.2 mRNA downstream 50161 43286135 ~ 43287969 (+) True taf10
TU916660 other upstream 884147 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 900495 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1208530 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1797510 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2211431 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 959741 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1206688 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2898757 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4746027 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5309480 48545454 ~ 48570593 (+) True G812688

Expression Profile