RNA id: TU917726


Basic Information

Item Value
RNA id TU917726
length 213
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G806510
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43435660 ~ 43435872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATGTACAAGTGacttgatagtgtgtgtgtgcgcgcgcgcataTATCTCTACTCCAGGGATTCGTTAACAAAGAAACAACAGGACTGTGGCCCTTGAGAAACCAGAGTCGTGACCTTCTGCTTTTCACCAGTAAAAGAAGAGAGAAGCTCACCTCATTCTCCACATGCCTCAGGTTGCTCTTCACCTTCAAGTAGATCTCGGCGTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917682 lncRNA upstream 71187 43363664 ~ 43364473 (+) True G806470
TU917670 lncRNA upstream 112982 43320051 ~ 43322678 (+) True G806458
TU917615 lncRNA upstream 195037 43240263 ~ 43240623 (+) True G806407
TU917614 lncRNA upstream 195836 43239616 ~ 43239824 (+) True G806406
TU917613 lncRNA upstream 196741 43238702 ~ 43238919 (+) True G806405
TU917729 lncRNA downstream 5286 43441158 ~ 43441383 (+) True G806513
TU918125 lncRNA downstream 53005 43488877 ~ 43489132 (+) True G806884
TU918131 lncRNA downstream 57445 43493317 ~ 43493848 (+) True G806890
TU918165 lncRNA downstream 94217 43530089 ~ 43531959 (+) True G806917
TU918201 lncRNA downstream 150389 43586261 ~ 43586531 (+) True G806953
XM_021615817.1 mRNA upstream 99970 43329368 ~ 43335690 (+) False ybx1
XM_021615818.1 mRNA upstream 99970 43329368 ~ 43335690 (+) True ybx1
XM_021615815.2 mRNA upstream 111851 43288205 ~ 43323809 (+) False ppih
XM_036988074.1 mRNA downstream 73106 43508978 ~ 43579823 (+) False acot7
XM_036988072.1 mRNA downstream 73107 43508979 ~ 43579823 (+) False acot7
XM_036988071.1 mRNA downstream 73111 43508983 ~ 43579823 (+) False acot7
XM_036988070.1 mRNA downstream 73112 43508984 ~ 43579823 (+) False acot7
XM_036988073.1 mRNA downstream 73112 43508984 ~ 43579823 (+) False acot7
TU916660 other upstream 1086874 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1103222 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1411257 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2000237 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2414158 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 759843 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1006790 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2698859 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4546129 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5109582 48545454 ~ 48570593 (+) True G812688

Expression Profile