RNA id: TU917729


Basic Information

Item Value
RNA id TU917729
length 226
lncRNA type intronic
GC content 0.39
exon number 1
gene id G806513
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43441158 ~ 43441383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGcggtgtcatttacaaaatagcctcagaCACTCTACtaagcaaattggatgcagtctatcacagtgccatcagttttgtcaccaaagccccatacacagaagaagtcgggaagtttacatacaccttagccaaatacatttaaagtcagattcacaattcctgacatttaatcctagtaaaaattacctgtcttgggtcagttaggatcaccacttaatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917726 lncRNA upstream 5286 43435660 ~ 43435872 (+) True G806510
TU917682 lncRNA upstream 76685 43363664 ~ 43364473 (+) True G806470
TU917670 lncRNA upstream 118480 43320051 ~ 43322678 (+) True G806458
TU917615 lncRNA upstream 200535 43240263 ~ 43240623 (+) True G806407
TU917614 lncRNA upstream 201334 43239616 ~ 43239824 (+) True G806406
TU918125 lncRNA downstream 47494 43488877 ~ 43489132 (+) True G806884
TU918131 lncRNA downstream 51934 43493317 ~ 43493848 (+) True G806890
TU918165 lncRNA downstream 88706 43530089 ~ 43531959 (+) True G806917
TU918201 lncRNA downstream 144878 43586261 ~ 43586531 (+) True G806953
TU918206 lncRNA downstream 149652 43591035 ~ 43591279 (+) True G806958
XM_021615817.1 mRNA upstream 105468 43329368 ~ 43335690 (+) False ybx1
XM_021615818.1 mRNA upstream 105468 43329368 ~ 43335690 (+) True ybx1
XM_021615815.2 mRNA upstream 117349 43288205 ~ 43323809 (+) False ppih
XM_036988074.1 mRNA downstream 67595 43508978 ~ 43579823 (+) False acot7
XM_036988072.1 mRNA downstream 67596 43508979 ~ 43579823 (+) False acot7
XM_036988071.1 mRNA downstream 67600 43508983 ~ 43579823 (+) False acot7
XM_036988070.1 mRNA downstream 67601 43508984 ~ 43579823 (+) False acot7
XM_036988073.1 mRNA downstream 67601 43508984 ~ 43579823 (+) False acot7
TU916660 other upstream 1092372 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1108720 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1416755 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2005735 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2419656 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 754332 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1001279 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2693348 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4540618 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5104071 48545454 ~ 48570593 (+) True G812688

Expression Profile