RNA id: TU918165


Basic Information

Item Value
RNA id TU918165
length 243
lncRNA type intronic
GC content 0.54
exon number 2
gene id G806917
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43530089 ~ 43531959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcgaagagcccggatctcagtcccattgagcacgtctgggacctgttggatcggaggatgagggctagggccattccccccagaaatgtccaggaacttacaggtgccttggtggaactgtggggtaacatctcagagcaagaactggcaaatctggtgcagtccatgaggaggtgatgcactgcagtacttaatgcagatggtggccacaccagatactgactgtagattttgacccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918131 lncRNA upstream 36241 43493317 ~ 43493848 (+) True G806890
TU918125 lncRNA upstream 40957 43488877 ~ 43489132 (+) True G806884
TU917729 lncRNA upstream 88706 43441158 ~ 43441383 (+) True G806513
TU917726 lncRNA upstream 94217 43435660 ~ 43435872 (+) True G806510
TU917682 lncRNA upstream 165616 43363664 ~ 43364473 (+) True G806470
TU918201 lncRNA downstream 54302 43586261 ~ 43586531 (+) True G806953
TU918206 lncRNA downstream 59076 43591035 ~ 43591279 (+) True G806958
TU918212 lncRNA downstream 119032 43650991 ~ 43652425 (+) False G806959
TU918207 lncRNA downstream 119078 43651037 ~ 43652425 (+) True G806959
TU918217 lncRNA downstream 134886 43666845 ~ 43690636 (+) True LOC118966053
XM_021615817.1 mRNA upstream 194399 43329368 ~ 43335690 (+) False ybx1
XM_021615818.1 mRNA upstream 194399 43329368 ~ 43335690 (+) True ybx1
XM_021615815.2 mRNA upstream 206280 43288205 ~ 43323809 (+) False ppih
XM_036988077.1 mRNA downstream 1297 43533256 ~ 43579823 (+) True acot7
XM_036988078.1 mRNA downstream 59546 43591505 ~ 43647450 (+) False LOC110531183
XM_036988079.1 mRNA downstream 80503 43612462 ~ 43647450 (+) True LOC110531183
XR_005053255.1 mRNA downstream 134853 43666812 ~ 43690641 (+) False LOC118966053
XM_036988082.1 mRNA downstream 211509 43743468 ~ 43764862 (+) False wrap73
TU916660 other upstream 1181303 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1197651 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1505686 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2094666 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2508587 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 663756 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 910703 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2602772 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4450042 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5013495 48545454 ~ 48570593 (+) True G812688

Expression Profile