RNA id: TU918206


Basic Information

Item Value
RNA id TU918206
length 245
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G806958
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43591035 ~ 43591279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTgcatttatcgatggcaatttgaatgcacagagatattgtgatgagatcttgaggcccattgtcatgccttTTTTAagatatgtgaccaacagatgcatatctgtattccatagtcatgtgaaatccatagattagggcctaatgaattcatttcaattgactgatttccttatatgaactataactcagtaaaatgtttgaaattgcatgttgcgtttgtatttttgttcagtatagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918201 lncRNA upstream 4504 43586261 ~ 43586531 (+) True G806953
TU918165 lncRNA upstream 59076 43530089 ~ 43531959 (+) True G806917
TU918131 lncRNA upstream 97187 43493317 ~ 43493848 (+) True G806890
TU918125 lncRNA upstream 101903 43488877 ~ 43489132 (+) True G806884
TU917729 lncRNA upstream 149652 43441158 ~ 43441383 (+) True G806513
TU918212 lncRNA downstream 59712 43650991 ~ 43652425 (+) False G806959
TU918207 lncRNA downstream 59758 43651037 ~ 43652425 (+) True G806959
TU918217 lncRNA downstream 75566 43666845 ~ 43690636 (+) True LOC118966053
TU918322 lncRNA downstream 150547 43741826 ~ 43742063 (+) True G807060
TU918323 lncRNA downstream 151311 43742590 ~ 43742840 (+) True G807061
XM_036988070.1 mRNA upstream 11212 43508984 ~ 43579823 (+) False acot7
XM_036988078.1 mRNA downstream 226 43591505 ~ 43647450 (+) False LOC110531183
XM_036988079.1 mRNA downstream 21183 43612462 ~ 43647450 (+) True LOC110531183
XR_005053255.1 mRNA downstream 75533 43666812 ~ 43690641 (+) False LOC118966053
XM_036988082.1 mRNA downstream 152189 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA downstream 152189 43743468 ~ 43764862 (+) True wrap73
TU916660 other upstream 1242249 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1258597 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1566632 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2155612 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2569533 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 604436 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 851383 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2543452 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4390722 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4954175 48545454 ~ 48570593 (+) True G812688

Expression Profile