RNA id: TU918212


Basic Information

Item Value
RNA id TU918212
length 1435
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G806959
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43650991 ~ 43652425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttcatcgttttgatgtcttccctattattctacaatgtagaaaatagtaaaaaataaagaaaaactcgaATACTTGAATaagtatgtgtccaaacttttgactgattctgttatgtatatatttgtacctttattttatcaggaaGTCATACTGacaccaaggtctcttttacagatgagccatGAATTACATACATTATAGAAaatacacaaatcaaaatataaatacaagcagaaataaataaataaaaacacattcatcagtaataagcaATAAGGATATTTGTCAAATCCGTCATGATTAATGTATTGTAACAGGCACACGATGTGATTACTAAAGTCcgatttttatatttttgactgttTTCGTTGTATAACAGTTAGGCTAGTtgtcccttttcaggtttagaagtgACTACTAATCGCTAAATGGTATTCCTATAAACTGATAGCATAGCTAAATTAGCATACAGAAATCGGTGACATTAGTCAAAGTCGTTTTTAAGCAGTTGATTTATGATGATGACTTGATGGACAtgtattggggttgacatccatacaagcattatactCCGATGTTTACCCCcaacatagtgtgaaatacacatataaacaatagcctaaatgtaggcaaatgttgttgttggacaatGAGGAGATTAGGGATCTTTCCCCCACTCGTTTCCATGGTATTCCCATTGTTTTGGTCGAGTTCAATTGACCTCAGaaactggtacccaggctagataAATGCACCTATAaggtataatgtgtgtgtgcctCATAGAAAGTGTGCTATTATCATAATACTTTGCTTACAAATGTTTTGCATACACTTTAAGCTAATTTGTAGCATAAATCATGCTCCCAAAGTCCAGGTTATTAATTTAGGTTAGCCTGTTAATTGTGCACCTCTCACCCCTTGTTCAATATTCAAATGAATATCATAATGTGAACACCTTTCTTTGAAAGTATTGCCGTCTTTATATTCCCTTTTCGAAATATGCCACGTCATTGACTTTTTCTGCATtatgtttttctctgtgtttacAGTAGCCTACCTATTTATCAGAATCTAATTTTGTAACATATCCTGCTCTGTTAAAGCTTTTATGACTGTCAATCCTATGAACAATATTTGGTGTTTTTGTTGCTCAGATGATGGTTTTGTTAAAAGGATAAAGATCTATTTCGAATCAAAGTTGCAGTGGGAAAAAAACACTTTATTAGTTTGAAATCGTTGAAAGTGTGTTTTGCGtttgtattttgaattgtttttttgtttttgtttttttccgtGAGGTGCACATCAACCATATTAGAGTTTGATTCACAACTCGGTTTTATTGAATTGATGTTCACACTTCTTTGAGATAATTCGAGATATTATTCTGTAAGGACCAGAAAAAAATAAAGCAGATGTTTCGACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918206 lncRNA upstream 59712 43591035 ~ 43591279 (+) True G806958
TU918201 lncRNA upstream 64460 43586261 ~ 43586531 (+) True G806953
TU918165 lncRNA upstream 119032 43530089 ~ 43531959 (+) True G806917
TU918131 lncRNA upstream 157143 43493317 ~ 43493848 (+) True G806890
TU918125 lncRNA upstream 161859 43488877 ~ 43489132 (+) True G806884
TU918217 lncRNA downstream 14420 43666845 ~ 43690636 (+) True LOC118966053
TU918322 lncRNA downstream 89401 43741826 ~ 43742063 (+) True G807060
TU918323 lncRNA downstream 90165 43742590 ~ 43742840 (+) True G807061
TU918331 lncRNA downstream 113019 43765444 ~ 43768155 (+) True G807063
TU918406 lncRNA downstream 206025 43858450 ~ 43858722 (+) True G807137
XM_036988078.1 mRNA upstream 3541 43591505 ~ 43647450 (+) False LOC110531183
XM_036988079.1 mRNA upstream 3541 43612462 ~ 43647450 (+) True LOC110531183
XM_036988070.1 mRNA upstream 71168 43508984 ~ 43579823 (+) False acot7
XR_005053255.1 mRNA downstream 14387 43666812 ~ 43690641 (+) False LOC118966053
XM_036988082.1 mRNA downstream 91043 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA downstream 91043 43743468 ~ 43764862 (+) True wrap73
XR_002474917.2 mRNA downstream 381891 44034316 ~ 44034840 (+) True LOC110533015
XM_021615846.2 mRNA downstream 772589 44425014 ~ 44429101 (+) True LOC110532176
TU916660 other upstream 1302205 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1318553 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1626588 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2215568 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2629489 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 543290 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 790237 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2482306 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4329576 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4893029 48545454 ~ 48570593 (+) True G812688

Expression Profile