RNA id: TU918322


Basic Information

Item Value
RNA id TU918322
length 238
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G807060
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43741826 ~ 43742063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACAGCGTATTATCCTTTTTATAACATGTCTCATATCTGTAACATTCGTCAAAAATCAAGCCATCGATTAAAAAGCACACATTATCGAGTATTTTTTTCTCCTTCCAGAAATGGCTGACCACTCACGACGAAGAAAATCATTAGATGATAAAGCGAGGAAACTTTAAGTGTCATGAGCTTCCTCCGCGAGGTTGTGTTATTGAGATTTAGAGTTGGGTGGGATTCGGGTGACAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918217 lncRNA upstream 51190 43666845 ~ 43690636 (+) True LOC118966053
TU918212 lncRNA upstream 89401 43650991 ~ 43652425 (+) False G806959
TU918207 lncRNA upstream 89401 43651037 ~ 43652425 (+) True G806959
TU918206 lncRNA upstream 150547 43591035 ~ 43591279 (+) True G806958
TU918201 lncRNA upstream 155295 43586261 ~ 43586531 (+) True G806953
TU918323 lncRNA downstream 527 43742590 ~ 43742840 (+) True G807061
TU918331 lncRNA downstream 23381 43765444 ~ 43768155 (+) True G807063
TU918406 lncRNA downstream 116387 43858450 ~ 43858722 (+) True G807137
TU918450 lncRNA downstream 184888 43926951 ~ 43931306 (+) True G807176
TU918491 lncRNA downstream 277880 44019943 ~ 44090309 (+) True G807215
XR_005053255.1 mRNA upstream 51185 43666812 ~ 43690641 (+) False LOC118966053
XM_036988078.1 mRNA upstream 94376 43591505 ~ 43647450 (+) False LOC110531183
XM_036988079.1 mRNA upstream 94376 43612462 ~ 43647450 (+) True LOC110531183
XM_036988076.1 mRNA upstream 162003 43511480 ~ 43579823 (+) False acot7
XM_036988082.1 mRNA downstream 1405 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA downstream 1405 43743468 ~ 43764862 (+) True wrap73
XR_002474917.2 mRNA downstream 292253 44034316 ~ 44034840 (+) True LOC110533015
XM_021615846.2 mRNA downstream 682951 44425014 ~ 44429101 (+) True LOC110532176
XM_036988106.1 mRNA downstream 768990 44511053 ~ 44790843 (+) False agrn
TU916660 other upstream 1393040 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1409388 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1717423 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2306403 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2720324 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 453652 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 700599 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2392668 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4239938 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4803391 48545454 ~ 48570593 (+) True G812688

Expression Profile