RNA id: TU918323


Basic Information

Item Value
RNA id TU918323
length 251
lncRNA type intronic
GC content 0.37
exon number 1
gene id G807061
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43742590 ~ 43742840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCATTGTTATAATGTGAAATATGGTTTCTTGGAGACGCTAATTCCACAAATCTTCTTCTGAATATTTGCTTTACAGACCTATAACCATATTTCACATTATAACAATGAGGGAGTTATATTAACCTGAGCTGCAGTGCACCGGGCTACCTGCAGCTCAGGTTAATATAACTCCCTCATATAGGGCTGTAAAGCAAATATTCAGAAGAAGATTTGTGGAATTGGCGTCTCCAAGAAACCATATTTTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918322 lncRNA upstream 527 43741826 ~ 43742063 (+) True G807060
TU918217 lncRNA upstream 51954 43666845 ~ 43690636 (+) True LOC118966053
TU918212 lncRNA upstream 90165 43650991 ~ 43652425 (+) False G806959
TU918207 lncRNA upstream 90165 43651037 ~ 43652425 (+) True G806959
TU918206 lncRNA upstream 151311 43591035 ~ 43591279 (+) True G806958
TU918331 lncRNA downstream 22604 43765444 ~ 43768155 (+) True G807063
TU918406 lncRNA downstream 115610 43858450 ~ 43858722 (+) True G807137
TU918450 lncRNA downstream 184111 43926951 ~ 43931306 (+) True G807176
TU918491 lncRNA downstream 277103 44019943 ~ 44090309 (+) True G807215
TU918555 lncRNA downstream 382225 44125065 ~ 44128750 (+) True G807273
XR_005053255.1 mRNA upstream 51949 43666812 ~ 43690641 (+) False LOC118966053
XM_036988078.1 mRNA upstream 95140 43591505 ~ 43647450 (+) False LOC110531183
XM_036988079.1 mRNA upstream 95140 43612462 ~ 43647450 (+) True LOC110531183
XM_036988075.1 mRNA upstream 162767 43518926 ~ 43579823 (+) False acot7
XM_036988082.1 mRNA downstream 628 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA downstream 628 43743468 ~ 43764862 (+) True wrap73
XR_002474917.2 mRNA downstream 291476 44034316 ~ 44034840 (+) True LOC110533015
XM_021615846.2 mRNA downstream 682174 44425014 ~ 44429101 (+) True LOC110532176
XM_036988106.1 mRNA downstream 768213 44511053 ~ 44790843 (+) False agrn
TU916660 other upstream 1393804 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1410152 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1718187 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2307167 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2721088 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 452875 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 699822 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2391891 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4239161 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4802614 48545454 ~ 48570593 (+) True G812688

Expression Profile