RNA id: TU918406


Basic Information

Item Value
RNA id TU918406
length 253
lncRNA type intronic
GC content 0.50
exon number 2
gene id G807137
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43858450 ~ 43858722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtctgacgctgtctgtctgtctctctgtagtctgtctgtctttgtctgtctctgtctgtctgacgctgtagtctgtctttctctgtctgtctgacgctgtctgtctgtctttcacctGTAACTCTGCTACTACtatcctcccactctctctgtagtctgtctgtctgacgctgtagtctgtctgtctctgtctgtctctgtctgtctctgtctgtgtgtctgtctctgtctgtctgacgctgtctgactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918331 lncRNA upstream 90295 43765444 ~ 43768155 (+) True G807063
TU918323 lncRNA upstream 115610 43742590 ~ 43742840 (+) True G807061
TU918322 lncRNA upstream 116387 43741826 ~ 43742063 (+) True G807060
TU918217 lncRNA upstream 167814 43666845 ~ 43690636 (+) True LOC118966053
TU918212 lncRNA upstream 206025 43650991 ~ 43652425 (+) False G806959
TU918450 lncRNA downstream 68229 43926951 ~ 43931306 (+) True G807176
TU918491 lncRNA downstream 161221 44019943 ~ 44090309 (+) True G807215
TU918555 lncRNA downstream 266343 44125065 ~ 44128750 (+) True G807273
TU918571 lncRNA downstream 311274 44169996 ~ 44170316 (+) True G807289
TU918992 lncRNA downstream 319211 44177933 ~ 44178163 (+) True G807656
XM_036988082.1 mRNA upstream 93588 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA upstream 93588 43743468 ~ 43764862 (+) True wrap73
XR_005053255.1 mRNA upstream 167809 43666812 ~ 43690641 (+) False LOC118966053
XM_036988078.1 mRNA upstream 211000 43591505 ~ 43647450 (+) False LOC110531183
XR_002474917.2 mRNA downstream 175594 44034316 ~ 44034840 (+) True LOC110533015
XM_021615846.2 mRNA downstream 566292 44425014 ~ 44429101 (+) True LOC110532176
XM_036988106.1 mRNA downstream 652331 44511053 ~ 44790843 (+) False agrn
XM_036988107.1 mRNA downstream 652331 44511053 ~ 44790843 (+) False agrn
XM_036988108.1 mRNA downstream 652331 44511053 ~ 44790843 (+) False agrn
TU916660 other upstream 1509664 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1526012 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1834047 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2423027 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2836948 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 336993 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 583940 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2276009 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4123279 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4686732 48545454 ~ 48570593 (+) True G812688

Expression Profile