RNA id: TU918450


Basic Information

Item Value
RNA id TU918450
length 343
lncRNA type intronic
GC content 0.48
exon number 2
gene id G807176
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43926951 ~ 43931306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgggaggagggGGCAGGAGTGCAGAGAGGTGGCGAGAgaggtggcgagagagagagagagagagagagagagagagggagagagagacagagagagagagagagacagagagacagagagacagagagacagagagacagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagacagagagacagagacagagagagacagagacagagacagagattttTGAAACAATTGTAAATCGACTTTGGGTCCATAAAGAGCGCTATATAAAACCTATGTATTATTATAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU918406 lncRNA upstream 68229 43858450 ~ 43858722 (+) True G807137
TU918331 lncRNA upstream 158796 43765444 ~ 43768155 (+) True G807063
TU918323 lncRNA upstream 184111 43742590 ~ 43742840 (+) True G807061
TU918322 lncRNA upstream 184888 43741826 ~ 43742063 (+) True G807060
TU918217 lncRNA upstream 236315 43666845 ~ 43690636 (+) True LOC118966053
TU918491 lncRNA downstream 88637 44019943 ~ 44090309 (+) True G807215
TU918555 lncRNA downstream 193759 44125065 ~ 44128750 (+) True G807273
TU918571 lncRNA downstream 238690 44169996 ~ 44170316 (+) True G807289
TU918992 lncRNA downstream 246627 44177933 ~ 44178163 (+) True G807656
TU919004 lncRNA downstream 259761 44191067 ~ 44191777 (+) True G807665
XM_036988082.1 mRNA upstream 162089 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA upstream 162089 43743468 ~ 43764862 (+) True wrap73
XR_005053255.1 mRNA upstream 236310 43666812 ~ 43690641 (+) False LOC118966053
XM_036988078.1 mRNA upstream 279501 43591505 ~ 43647450 (+) False LOC110531183
XR_002474917.2 mRNA downstream 103010 44034316 ~ 44034840 (+) True LOC110533015
XM_021615846.2 mRNA downstream 493708 44425014 ~ 44429101 (+) True LOC110532176
XM_036988106.1 mRNA downstream 579747 44511053 ~ 44790843 (+) False agrn
XM_036988107.1 mRNA downstream 579747 44511053 ~ 44790843 (+) False agrn
XM_036988108.1 mRNA downstream 579747 44511053 ~ 44790843 (+) False agrn
TU916660 other upstream 1578165 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 1594513 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1902548 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 2491528 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2905449 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 264409 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 511356 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2203425 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4050695 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4614148 48545454 ~ 48570593 (+) True G812688

Expression Profile