RNA id: TU919191


Basic Information

Item Value
RNA id TU919191
length 1338
RNA type TUCP
GC content 0.46
exon number 2
gene id G807841
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44442662 ~ 44453077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGGTCAATTTCTCCTTTAGAGTAGTTTTTATTTCAGTCATTCATATTCACACAGTGATAATACTCATTGCTCCTACTACTTCTACAAGGAAACTATGATACAAGTATTCCATTTTACTGCAGGGAGAAGGCATTTATagattaaacaaatgaaaatccTAGTTCTGTTATGTACATTATATACAAACAGTATAAACAAAATGAATCTTCACATACATTTGATAACAATGGATAcatttgtttaaaacattgcGGTACTATTACACATTGATAATCAACAGGAAGAATTTTAACGGTAGAAGAGTAACACAGCTGCTTCAGTTAACTGCTTTGATGCACTCCATTCTGTGTTGGTCCCATAGCCATTCCAGTCAAAGGCTGGGAAGTCGCCACACTGACGAGGGGCTCCCTCAGGGAAATGTCCACCACCACCAATACAGTAATGTTCAGTGTCGCCGCCAGTTGTTGGTTTGACCCCAGAGCAGATAGCCATGGCCGCCAGTTCATTATTTATTGGCCTGAAAGTGATGAAGCCAGGTTCAAACTGGTTTCTTGTGTTGGGTCCGTAAAGTTTTCTTGTGGTTTCTTTGTCCCCAAAGTCGTACACAATTGGAATGACAGGTCCTGTGTTCCCACTTGCCTCAGCATTATATCTCACTGGGTAGAGCTTAAAGAGTTGATGCAGATTTCCCCCTTGAATGGAGAGAAAGCTTCTCTCTGTGTGGTAACGGAGGATGGCGCCTAGGTTCCAGTGTTCCATCGGGGAGTTGTTGGGAACGTGCCACACCGAAATGTCTTCTGCCACAATGTCATAATACCCAGGATTCTTGAAGTCGTCTGAGGTGGCACCCTCTGCGGTTCCAAAAGTGGCCCTGTTGGCCCAGTTCCCATCTCCGTCTGGCCAGTTGGGGTTGCTGCCTTGCTGGCTGGACCAACGGTCACCCATTGTGCACTTCCCATACACGTTGTTCTCGTGCACGCTCGCCACAAGTGTCCAGCCGCCGCCAGCGGTGGTCATGTCGCAGAAGGTCTGGTAGACTGTCCCGCTGGCTGTGGACAGGTAGTACAGCCCATCTTCATGTTGATTATATCGGTCCCTTATTTCCTTACAGCTTCTGCCAATGTAACTAGACCTGATCCTCAGTCTTAAATCGGTTGCGGCAACAACTGGAGCTGCTGCATACACGTTTCCTTGTAGTGCTTCTGGAAATTGAGGCAGTTCCACCAACAGTAGATGGATCATTATCAGGAGAACACAATACTTCATGTCTTCTGTGGTGAGTTCTCAGTGAAGTATCTATTCAGTCTGTGTCCAAGACAAGGTATAACAAACACA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919052 lncRNA upstream 135328 44244624 ~ 44307334 (+) True G807712
TU919018 lncRNA upstream 192906 44196610 ~ 44249756 (+) True G807678
TU919020 lncRNA upstream 240374 44199775 ~ 44202288 (+) True G807680
TU919004 lncRNA upstream 250885 44191067 ~ 44191777 (+) True G807665
TU918992 lncRNA upstream 264499 44177933 ~ 44178163 (+) True G807656
TU919381 lncRNA downstream 34379 44487456 ~ 44487730 (+) True G808005
TU919403 lncRNA downstream 50374 44503451 ~ 44503914 (+) True G808027
TU919408 lncRNA downstream 54171 44507248 ~ 44507477 (+) True G808032
TU919529 lncRNA downstream 328417 44781494 ~ 44782421 (+) True G808145
TU919570 lncRNA downstream 420315 44873392 ~ 44873630 (+) True G808184
XM_021615846.2 mRNA upstream 13561 44425014 ~ 44429101 (+) True LOC110532176
XR_002474917.2 mRNA upstream 407822 44034316 ~ 44034840 (+) True LOC110533015
XM_036988082.1 mRNA upstream 677800 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA upstream 677800 43743468 ~ 43764862 (+) True wrap73
XR_005053255.1 mRNA upstream 752021 43666812 ~ 43690641 (+) False LOC118966053
XM_036988106.1 mRNA downstream 57976 44511053 ~ 44790843 (+) False agrn
XM_036988107.1 mRNA downstream 57976 44511053 ~ 44790843 (+) False agrn
XM_036988108.1 mRNA downstream 57976 44511053 ~ 44790843 (+) False agrn
XM_036988109.1 mRNA downstream 57976 44511053 ~ 44790843 (+) False agrn
XM_036988110.1 mRNA downstream 57976 44511053 ~ 44790843 (+) False agrn
TU919016 other upstream 246621 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2093876 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2110224 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 2418259 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 3007239 41434884 ~ 41435423 (+) False LOC110532096
TU921250 other downstream 1681654 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 3528924 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 4092377 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 4506672 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 4550242 49003319 ~ 49006710 (+) True G813074

Expression Profile