RNA id: TU920169


Basic Information

Item Value
RNA id TU920169
length 369
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G808724
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45161494 ~ 45161862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacagaccctgtatgttttacattgggtatcgtgttattagtcccacccttcagctccattcaacctctcccatctatctctcaacatcatccattttggaattctgtttgccatatattttcaactgtgctgtgatgcttcacaaaagtactgaacctttctattctcatagcttctacagattgtaaattaaaaataattttttttgctgaaataattattatattattgattgattgactatgtcTTTTCAAAttacccagtattgctatctgcagcgttagttctaggcaaatgttgcaattcttcagccattcctggacctgtgaccaaaaacgagctacaaaTGGACAATAGCAATACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU920167 lncRNA upstream 1011 45160275 ~ 45160483 (+) True G808722
TU920157 lncRNA upstream 7603 45153571 ~ 45153891 (+) True G808712
TU920148 lncRNA upstream 12510 45148784 ~ 45148984 (+) True G808703
TU920147 lncRNA upstream 12789 45148480 ~ 45148705 (+) True G808702
TU919673 lncRNA upstream 87173 45074073 ~ 45074321 (+) True G808262
TU920196 lncRNA downstream 15001 45176863 ~ 45180462 (+) True chrna4b
TU920238 lncRNA downstream 59230 45221092 ~ 45221372 (+) True G808777
TU920247 lncRNA downstream 65579 45227441 ~ 45234586 (+) False G808783
TU920249 lncRNA downstream 67596 45229458 ~ 45237572 (+) True G808783
TU920259 lncRNA downstream 79451 45241313 ~ 45253003 (+) True G808793
XM_021615863.2 mRNA upstream 42308 45076564 ~ 45119186 (+) False LOC110532183
XM_021615865.2 mRNA upstream 42308 45076564 ~ 45119186 (+) False LOC110532183
XM_036988122.1 mRNA upstream 42308 45076564 ~ 45119186 (+) True LOC110532183
XM_036988123.1 mRNA upstream 48504 45076564 ~ 45112990 (+) False LOC110532183
XM_036988124.1 mRNA upstream 57946 45076564 ~ 45103548 (+) False LOC110532183
XM_021615870.2 mRNA downstream 18543 45180405 ~ 45191840 (+) False chrna4b
XM_021615872.2 mRNA downstream 124118 45285980 ~ 45298752 (+) True LOC110532188
XM_021615875.2 mRNA downstream 141504 45303366 ~ 45311274 (+) False LOC110532189
XM_036988126.1 mRNA downstream 141668 45303530 ~ 45311274 (+) False LOC110532189
XM_021615873.2 mRNA downstream 141857 45303719 ~ 45311274 (+) True LOC110532189
TU919191 other upstream 708417 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 965453 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2812708 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2829056 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 3137091 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 972869 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 2820139 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3383592 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 3797887 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 3841457 49003319 ~ 49006710 (+) True G813074

Expression Profile