RNA id: TCONS_00003696


Basic Information

Item Value
RNA id TCONS_00003696
length 4122
RNA type mRNA
GC content 0.55
exon number 19
gene id XLOC_001869
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5954787 ~ 6004863 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCAGCCGGGACATGGAGAACAAGGAGACTCTGCGCGGGCTGCAGAAGATGGAGGACCGGCCTGAGGAGCGACTGATCCGAGAGAAGCTCAAGGCCACCTGTATGCCCACCTGGAAGAGCGAGTGGCTGGAGAGGCGGAGCAGGAGAGGACCAATGGTTGTGAAGCCCATTCCTCTGAGAGCCGACGGCACTGAAGCCGGGAGTGACAGTCACAACTCTTCTTCATCCCAGAGCCGAGGTCAACGCAGCCCGTCTCCCGGACCTTCCTCTTTCTCAGCCgcttcctcctcctcatcatcgtCCTCCACAAAGACTGCTGGGAAGCCAGATTCTCCTGGCCTACGCAGACGGAGAGCTTCACCAGTGCCCAGTGGACGTGTGACCCCTCCTCGAAGAGCTCCCTCCCCTGATGGCTTTTCCCCATACAGTCCAGAGGAGACCAGCCGCAGGGTCAACAAGGTCATGAGGGCGCGCCTGTACCTGCTCCAGCAAATAGGACCCAACTCATTCTTGATTGGCGGAGACAGTCCTGACAACAAGTTCAGGGTGTTCATTGGTCCACAGACCTGCAGCTGCGGCAGAGGAACTTTCTGCATCCATGTGCTCTTCGTCATGCTCCGAGTTTTCCAGCTGGAGCCTTCAGATCCTCTTCTGTGGCGGAAAACCCTCAAGAATTTTGAGGTGGAGAGCTTATTTCAGAAGTACCACAATCGCCGCAGCTCCCGCATCAAAGCTCCCTCACGCAGCACCATCCAGAAGTTTGTGTCCCGCATGTCCAACTCTCACACCTCGTGTACCTCCAGTGCCTCACCATCCAGTAATGAAAGCAGTATGAAGGACGAGGAGGAGCAGATGTGTCCCATCTGTCTGCTGGACATGCTGGATGAAGAAAGTCTGACAGTGTGTGAAGAGGGCTGCCGAAACAAACTCCACCATCACTGCATGTCTATATGGGCCGAGGAGTGCAGAAGAAATCACGATCCTTTAATCTGCCCACTGTGTAGAGCCAAATGGAAGCCTCATGATTTTTACAGTTATGAAGCGCCATCTACTGTGGAAAGCACAACCAGCCGCTCTCAGAGTCAAACAGctgcttcatcatcatcatcatcttcatctcttcATGCTGAGAGCTCCAGGACGGGCCAGGATGGAGACTTCTCTCTTCCTCAATATGGAGTTCAGCACATCCCTCAGACGTACACGGAGCTCGCCGAACCCTGGATCAAGGTGTTTGGATTGGAGCTGGTCGGCTGCCTCTTCTCTCGTAACTGGAACATCAGAGAAATGGCTCTGCGGCGGCTGTCCCATGACGTGAGTGGAGCCCTGCTCTTGGCCAACGGCGAGCACTCATTGGCCGGAGCGGGTGCAGGGGCAGGGCTGGCCGAGGTATCTGGAGACGTGGTGGTGGAGTCCTGCTGTAGTGTGCTCTCCATGGTCTGTGCAGACCCTGTCTACAAAGTCTACGTAGCAGCGCTGAAAACCCTGCGAGCGATGCTTGTCTACACCCCATGCCACTCTGCTTCAGAGAGGACTCGATTACAGCAGCTTCTGCGGCCCGTGGTGGAAACCATACTGGTCAAGTGTGCAGATGCTAACAGTCGCACCAGTCAGCTGTCCGTGTCCACTCTGCTGGAGCTGTGCAAAGGTCAAATGGGAGAACTCGCTGTGGGCAGAGAAATTCTCAAAGCAGGCTCTATTGGTATTGGTGGAGTTGACTATGTCCTGAACTGCATCTTGGGCTCTAAAACGGAGGCCAATAACTGGCAAGCACTGCTGGGTCGGCTGTGTCTGATTGACAGGCTCTTACTGGAGTTTCCTGCTGAATTCTACCCTCACATCGTGTCAGGTGGAGACTGCAACCAGGCGCAAAACGTTGTGGAGAGGTACCAGAAGCTGCTGCCTCTTCTAAGTTTTGCTCTGAAGTCCATTGATAACTCTCACTCCATGGTGGGAAAGCTTTCTCGTCGTGTCTTCCTGAGCGCTGCCCGTATGGTAGCTCGTGTGCCTCATGTCTTCGTTAAGCTACTGGACATGCTCAACGTCACCAGCTCCACCCACTATGCACGCATGCGCCGGCGTCTTCTGGCCATTGCGGAGGAGATGGACATCCTGGATGCGATTCATCTGGGACTAGATGACCTACAGAAAGAGCACACCTCACCCTCTTGTGCTTTCCTTGAACCCTCAGCCCCTCATAACTCCCCATGTACGACTGAAAGAAGCTCCCCCACCCATGGTCTACAGCAGCCCGCCGCTAAGGTGGCACTTTCAGGTCAAGCCAGTTCTACTCCTGTAGAGGACATAACCGAGAGACTCTCAAACATAGTCGCTAGCCCTGCTGAATTTCCAAAGCCCCCCATTCAGGCTCGAAACAGACCCGTTAGTCAGTGTCTGAACTCCCCCTCATCTGGTCAACCCCCAAGCCTTCCTTCTCTGTCCATGGCCAATGCCTCAGCCTTCCCTCCAGAAAACCCCAAAGCCCTGCCACAGAGTTTTATTCCCAGCAAGTTTGCCCAGTCCTCACTGGGTTCCCAACGCAAGTTGCCTCTTCAGAAAGGTGCCTGTAGTAGTAAAGAACCAGAGAAGCTTCCATCCCCTGTGTTTACTCAAGCTCGGCCACTGCCCCAGAGTCAGATCCACCGGCCCAGACCTTCTCGACCCACTCCTGCTGCCTCATCTGATGGAGCTAAAGCTTTAAGCCCTTTGACAAAGGGCAACATGAAACTGGACCTTCAGGAGGCCCGGTCCAGAGATGATGTGGCCTGCAGTGGGGGATCTGCTCTCATCCCCAGTGAGGACACTGCCTTCACGCCAGTGGAGGAGAAGTTCCACGGTCTGGATGCTTCAGCCGATCTCAGCTCCAGCATGGAGGACCTGCTGGAAGCCTCTATCCCTGCGGCAGACAGCACGGTCACCTTCCAGTCTGAAGTGGCAGTGCTGTCCCCCGAGCAGGCAAATGCAAACGATGACACGTACAGTGAAGACGTGACCCAGAACCAGAAGTGCAAGGAGAAGATGGAAGCTGAAGAAGAGGAGGCATTGGCTGTAGTCATGGCCATGTCTGAGTCACAAGACGCCCTACCTGTAATCCCACAGTTACAGGTGGACAAAGGGGAGGACGTGATCATTATTCAGGTGGATACACCAGAGACTCTGCCTGGTCATACCAAAGCAAAGCAGCCATACAGGGAGGGAAACGAATGGCTAAAAGGTCAACAGATTGGCCTGGGTGCCTTTTCGTCATGTTACCAGGCTCAGGATGTGGGCACTGGGACTCTGATGGCTGTCAAACAGGTGACGTACGTGAGGAACACTTCATCAGAGCAGGAGGAGGTGGTTGAGGCGCTACGAGAGGAGATTCGCATGATGGGTCTACTAAACCACCCACACATCATCCGCATGCTGGGGGCAACCTGTGAGAAGAACAACTACAACCTTTTCGTAGAGTGGATGGCAGGTGGCTCTGTATCTCATCTCTTGAATAAGTATGGCGCATTTAAAGAAGGTGTGATCATCAACTACACGGAGCAGCTTCTGCGGGGTCTGGCCTACCTTCATGAGAACCAGATCATCCACCGCGACATCAAAGGTGCCAATCTACTGATTGACAGCACAGGCCAGAGGCTGAGGATAGCTGATTTTGGGGCTGCAGCACGTTTGGCTTCGAAAGGCACTGGAGCAGGGGAGTTCCAGGGTCAACTTCTGGGAACCATTGCCTTCATGGCTCCGGAGGTGCTGAGAGGACAGCAGTACGGCCGGAGCTGTGATGTCTGGAGTGTTGGCTGTGCCATCATTGAGATGTCCTGTGCTAAACCTCCCTGGAACGCTGAAAAACACTCCAACCACCTGGCGCTCATTTTCAAGATCGCCAGCGCCACCACAGCGCCCTCCATCCCACCACACTTGTCTCCAGGCCTGCGGGACGTGACCCTGCGCTGTCTGGAGCTCCAGCCCACCGACCGGCCGCCCTCCAGAGAGCTCCTGAAACACCCCGTCTTCAGACACAGCTGGTAGAGCGCGAGCCGCAGCCGCCGAGACCACAAACTACTGAACACCGCGCCCACTGCTGTCATCCCACTAGCACTAATGCTAAAGCTAGTGCTAGTTTTTAGCCACTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04010 MAPK signaling pathway
ko04530 Tight junction
ko04622 RIG-I-like receptor signaling pathway
ko04912 GnRH signaling pathway
ko04935 Growth hormone synthesis, secretion and action
ko04722 Neurotrophin signaling pathway
ko05166 Human T-cell leukemia virus 1 infection
ko05161 Hepatitis B
ko01001 Protein kinases
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-412 Predicted to enable ATP binding activity; protein kinase activity; and zinc ion binding activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in 46,XY sex reversal 6 and breast cancer. Orthologous to human MAP3K1 (mitogen-activated protein kinase kinase kinase 1).

Ensembl:

ensembl_id ENSDART00000161887

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005677 lncRNA upstream 73554 5880700 ~ 5881233 (+) True XLOC_001868
TCONS_00005818 lncRNA upstream 161261 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00005676 lncRNA upstream 366557 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005817 lncRNA upstream 411646 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA upstream 411646 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005819 lncRNA downstream 111431 6116294 ~ 6116936 (+) True XLOC_001871
TCONS_00003709 lncRNA downstream 335605 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005820 lncRNA downstream 623756 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005821 lncRNA downstream 639534 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005822 lncRNA downstream 679555 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00003692 mRNA upstream 167501 5689525 ~ 5787286 (+) False XLOC_001866
TCONS_00003695 mRNA upstream 168120 5744941 ~ 5786667 (+) False XLOC_001866
TCONS_00003694 mRNA upstream 168120 5744941 ~ 5786667 (+) True XLOC_001866
TCONS_00003691 mRNA upstream 187615 5689510 ~ 5767172 (+) False XLOC_001866
TCONS_00003689 mRNA upstream 299678 5644356 ~ 5655109 (+) False XLOC_001865
TCONS_00003699 mRNA downstream 5707 6010570 ~ 6032875 (+) False XLOC_001870
TCONS_00003700 mRNA downstream 5711 6010574 ~ 6023725 (+) False XLOC_001870
TCONS_00003701 mRNA downstream 8213 6013076 ~ 6034397 (+) False XLOC_001870
TCONS_00003702 mRNA downstream 8299 6013162 ~ 6022033 (+) False XLOC_001870
TCONS_00003703 mRNA downstream 19326 6024189 ~ 6033094 (+) True XLOC_001870
TCONS_00003693 other upstream 185175 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 802386 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 807205 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 967304 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 1461429 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 1078908 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 1568453 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 2338325 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 2857658 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 2864605 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_01573427_01639447.mRNA True 6376 mRNA 0.49 23 CI01000304 1572399 ~ 1639839 (-)
bowfin (Amia calva) AMCG00010631 True 6859 mRNA 0.53 21 CM030129.1 37658318 ~ 37681546 (-)