RNA id: TU920967


Basic Information

Item Value
RNA id TU920967
length 690
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G809427
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45771336 ~ 45772370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTGATGCAGTGAGCAGCGGTGAGGACCCACTCGCTTGAAATCAGAGTTCCACCACAGGTGTGTCTCCACTCACCATCTCTGTCATACTGGAGAGAGATGCCAGGGCCAGCTGTTGGGCCTGACGTCCTCCCCTCCCACCACTCGTGTCACCACAGGAGGGAAGGTGGGCATGCCACACCCGTAGACTGttggacacaaacacactcaaaaCTCTCATTTATAACCTCAGTCTACTGGTGTTAGCTAGCATACATTACTATAGTATCAATACACTGTTGAGTCACATTTTGAGCTTAAATCATTTTGATTATGTTAGAAATGAatcatttttttaatggaaaCACTATCCACATGTATGTATTTCATTTGCAATGCCACTTTATAAAAATCTTTCAATAGGTTTAGCAATGTAGCATTCTGTCAATATTCTAACTGAAGATGGGAAGAGAAATAGGCTACTGTATAGTGTTCTGTTCTTATTAGTAAAACAAATAAGTAGAATCCTTACCAGCAGCAACCAGACAAGCAAGGACTACAAACTTCATCATGTTTGTATCTTCAAAATGTGTCTTCACACCAGGGATGCCTttatactgtaggctactgtatatgaCGTTTGACAGGTAAGACAAGAATTCAACAGATTCTGGGAAATGTTTCATCGGTCAGCCCACTCTGAAAACCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU920964 lncRNA downstream 11741 45759298 ~ 45759595 (-) True G809424
TU920961 lncRNA downstream 16854 45754236 ~ 45754482 (-) True G809421
TU920950 lncRNA downstream 39690 45731370 ~ 45731646 (-) True G809410
TU920948 lncRNA downstream 41374 45729731 ~ 45729962 (-) True G809408
TU920944 lncRNA downstream 49160 45721756 ~ 45722176 (-) True fhad1
TU921295 lncRNA upstream 14059 45786429 ~ 45786831 (-) True G809705
TU921474 lncRNA upstream 250805 46023175 ~ 46054854 (-) True G809881
TU921510 lncRNA upstream 303571 46075941 ~ 46076508 (-) True G809917
TU921530 lncRNA upstream 329481 46101851 ~ 46102054 (-) True G809937
TU921533 lncRNA upstream 333992 46106362 ~ 46106586 (-) True G809940
XM_036988139.1 mRNA downstream 7318 45760116 ~ 45764018 (-) True ela2
XM_036988138.1 mRNA downstream 15764 45719610 ~ 45755572 (-) False fhad1
XM_021615896.2 mRNA downstream 56174 45686064 ~ 45715162 (-) True efhd2
XM_036986947.1 mRNA downstream 116775 45641588 ~ 45654561 (-) True lrif1
XM_021615893.2 mRNA downstream 138810 45627726 ~ 45632526 (-) True si:dkeyp-110g5.4
XM_021615902.2 mRNA upstream 20839 45793209 ~ 45805841 (-) False tmem51a
XM_021615903.2 mRNA upstream 20839 45793209 ~ 45805864 (-) True tmem51a
XM_036988143.1 mRNA upstream 43904 45816274 ~ 45889345 (-) False LOC110532208
XM_021615904.2 mRNA upstream 43904 45816274 ~ 45977954 (-) False LOC110532208
XM_036988140.1 mRNA upstream 43904 45816274 ~ 46041265 (-) False LOC110532208
TU920588 other downstream 452570 45316618 ~ 45318766 (-) True pdyn
TU920571 other downstream 473486 45295856 ~ 45297850 (-) True G809071
TU919787 other downstream 1134490 44634559 ~ 44636846 (-) True G808375
TU919312 other downstream 1409170 44361416 ~ 44362166 (-) True G807941
TU919254 other downstream 1479259 44248798 ~ 44292077 (-) True tafa5l
TU922159 other upstream 414894 46187264 ~ 46190992 (-) True zmynd12
TU922220 other upstream 481144 46253514 ~ 46253995 (-) False G810563
TU922219 other upstream 481185 46253555 ~ 46255718 (-) False G810563
TU923044 other upstream 1406434 47178804 ~ 47181797 (-) True G811300
TU923583 other upstream 1890695 47663065 ~ 47664954 (-) False LOC110531190

Expression Profile