RNA id: TU921250



Basic Information


Item Value
RNA id TU921250
length 1002
RNA type TUCP
GC content 0.44
exon number 1
gene id G809685
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46134731 ~ 46135732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagtgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggattcggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacttggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcgctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatgggggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgtcttgcaaggaggaatggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU921230 lncRNA upstream 28139 46106392 ~ 46106592 (+) True G809666
TU921181 lncRNA upstream 93476 46040645 ~ 46041255 (+) True G809617
TU920981 lncRNA upstream 293427 45788180 ~ 45841304 (+) True G809439
TU920983 lncRNA upstream 345121 45788755 ~ 45789610 (+) True G809441
TU920979 lncRNA upstream 347972 45786407 ~ 45786759 (+) True G809438
TU921255 lncRNA downstream 5268 46141000 ~ 46141200 (+) True G809687
TU921259 lncRNA downstream 8731 46144463 ~ 46144679 (+) True G809691
TU921572 lncRNA downstream 66996 46202728 ~ 46203412 (+) True G809979
TU921573 lncRNA downstream 68876 46204608 ~ 46205463 (+) True G809980
TU921625 lncRNA downstream 114580 46250312 ~ 46252923 (+) True G810023
XM_021615900.2 mRNA upstream 359723 45771365 ~ 45775008 (+) True ela2l
XM_021615888.2 mRNA upstream 588238 45541443 ~ 45546493 (+) False LOC110532198
XM_036988134.1 mRNA upstream 588238 45541443 ~ 45546493 (+) True LOC110532198
XM_036988132.1 mRNA upstream 588825 45541443 ~ 45545906 (+) False LOC110532198
XM_036988133.1 mRNA upstream 588825 45541443 ~ 45545906 (+) False LOC110532198
XM_021615907.2 mRNA downstream 23217 46158949 ~ 46185603 (+) True LOC110532211
XM_021615911.2 mRNA downstream 71664 46207396 ~ 46249943 (+) False ccdc30
XM_021615914.2 mRNA downstream 71664 46207396 ~ 46249943 (+) False ccdc30
XM_036988147.1 mRNA downstream 71664 46207396 ~ 46249943 (+) False ccdc30
XM_021615913.2 mRNA downstream 71665 46207397 ~ 46249943 (+) False ccdc30
TU919191 other upstream 1681654 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 1938690 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 3785945 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 3802293 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 4110328 42021859 ~ 42024403 (+) True LOC110532114
TU923963 other downstream 1846269 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 2409722 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2824017 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2867587 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2979405 49115137 ~ 49115618 (+) True G813139

Expression Profile