RNA id: TU922218


Basic Information

Item Value
RNA id TU922218
length 971
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G810563
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46253514 ~ 46256922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggcacctaaagattctcagaccatgagaaacaatattttctggtctgataaaaccaagattggactctttggcctgaaagccaagcgtcacatctggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcagcatcatgctatggggatgtttttcagcggcagggactgggagattagtcagaatctaggcaaagatgaacagagcaaagtatagagaaatcccagatgaaaacctgcaccagagcgctcaggacctcagacttgggcgaaggttcaccttccaacaggagaatgaccctaagcacacagccaagacaaagcaggacaagtctcaatgtccttgagtggcccatccaaAGCCCGGACATCTCTTGACCTGATAATATCTGTGCAGAAactctcctcatccaacctgacagagcttgagaggatctgtaaagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagacttgatgctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgacctttctgtttttttgcaaaaatgtctaaaaaccagtttttgctttgtcttaatggggtattgtgtgtagattggtgagggtaaaaaacaatttaatcaattttagaataaggctgtaacataacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaaacaCTGTATGCATTCACATGACACCTGACATTCATTTCCAAACCCCTTGTTCTATTTTGACACAGATTGGGTCGGTTAaatgaaaacaaacacattctttgCAAAAATGTATGTCAATGGAAACAAATGTCGGATAATGTCTCGCGTCGAATAAAACTGAGCACTTACAAAGGCGTTTTGAAAACAGtgatatatagtaccagtcaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922213 lncRNA downstream 739 46254592 ~ 46255149 (-) False G810563
TU922202 lncRNA downstream 2960 46250286 ~ 46252928 (-) False G810560
TU922204 lncRNA downstream 3085 46250051 ~ 46252803 (-) False G810560
TU922221 lncRNA upstream 141 46256999 ~ 46257531 (-) False LOC110532215
TU922222 lncRNA upstream 218 46257076 ~ 46258100 (-) False LOC110532215
TU922224 lncRNA upstream 218 46257076 ~ 46257531 (-) False LOC110532215
TU922225 lncRNA upstream 317 46257175 ~ 46257531 (-) False LOC110532215
TU922223 lncRNA upstream 805 46257663 ~ 46258100 (-) True LOC110532215
XM_021615909.2 mRNA downstream 49184 46202726 ~ 46206704 (-) True LOC110532213
XM_036988145.1 mRNA downstream 55638 46187156 ~ 46200250 (-) False zmynd12
XM_021615908.2 mRNA downstream 55638 46187161 ~ 46200250 (-) False zmynd12
XM_036988141.1 mRNA downstream 214623 45816274 ~ 46041265 (-) False LOC110532208
XM_036988149.1 mRNA upstream 1177 46258035 ~ 46262865 (-) False LOC110532215
XM_021615919.2 mRNA upstream 1177 46258035 ~ 46263834 (-) False LOC110532215
XM_036988148.1 mRNA upstream 1178 46258036 ~ 46262865 (-) False LOC110532215
XM_021615916.2 mRNA upstream 1178 46258036 ~ 46263822 (-) False LOC110532215
XM_021615921.2 mRNA upstream 1179 46258037 ~ 46263821 (-) False LOC110532215
TU922219 other downstream 170 46253555 ~ 46255718 (-) False G810563
TU922220 other downstream 1893 46253514 ~ 46253995 (-) False G810563
TU922159 other downstream 64896 46187264 ~ 46190992 (-) True zmynd12
TU920588 other downstream 937122 45316618 ~ 45318766 (-) True pdyn
TU920571 other downstream 958038 45295856 ~ 45297850 (-) True G809071
TU923044 other upstream 921946 47178804 ~ 47181797 (-) True G811300
TU923583 other upstream 1406207 47663065 ~ 47664954 (-) False LOC110531190
TU923584 other upstream 1417532 47674390 ~ 47676649 (-) True LOC110531190
TU924356 other upstream 2021316 48278174 ~ 48286430 (-) True LOC110532252
TU924730 other upstream 2251787 48508645 ~ 48509094 (-) True G812840

Expression Profile