RNA id: TU921678



Basic Information


Item Value
RNA id TU921678
length 267
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G810076
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46294946 ~ 46295212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaatccctccatcagtgctcagactgtccgcaaaaggctgagagaggcttgactgagggcttgtaggcctgttgtaaaggcaggtcctcaccagacatcatcggcaacaacgttccctatgggcacaaacccaccgtcgctggaccagacagaactggcagaaagtgctcttcactgacgagtcgcagttttgtctcaccaggggtgatggtcggatttgcgtttatcgtcgaaggaatgagcgttacaccaagtaCCCTtactgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU921661 lncRNA upstream 30044 46264410 ~ 46264902 (+) True G810059
TU921659 lncRNA upstream 32889 46261772 ~ 46262057 (+) True G810057
TU921658 lncRNA upstream 33206 46261501 ~ 46261740 (+) True G810056
TU921632 lncRNA upstream 36864 46257728 ~ 46258082 (+) True G810030
TU921626 lncRNA upstream 37433 46256330 ~ 46257513 (+) True G810024
TU921685 lncRNA downstream 7752 46302964 ~ 46303164 (+) True G810083
TU921615 lncRNA downstream 10220 46305432 ~ 46309854 (+) False G810017
TU921617 lncRNA downstream 10220 46305432 ~ 46316331 (+) False G810017
TU921619 lncRNA downstream 17904 46313116 ~ 46316331 (+) True G810017
TU921614 lncRNA downstream 43781 46338993 ~ 46360462 (+) False G810016
XM_021615923.2 mRNA upstream 17041 46263207 ~ 46277905 (+) False LOC110532217
XM_021615922.2 mRNA upstream 17041 46268997 ~ 46277905 (+) True LOC110532217
XM_036988147.1 mRNA upstream 45003 46207396 ~ 46249943 (+) False ccdc30
XM_036988151.1 mRNA downstream 6052 46301264 ~ 46304747 (+) True LOC118966055
XR_005053263.1 mRNA downstream 13800 46309012 ~ 46310775 (+) True LOC118966056
XM_021615926.2 mRNA downstream 22944 46318156 ~ 46354342 (+) True LOC110532219
XM_021615927.2 mRNA downstream 65801 46361013 ~ 46371475 (+) True LOC110532220
XM_021615928.2 mRNA downstream 91621 46386833 ~ 46389138 (+) True LOC110532221
TU921250 other upstream 159214 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 1841869 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2098905 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 3946160 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 3962508 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1686789 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 2250242 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2664537 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2708107 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2819925 49115137 ~ 49115618 (+) True G813139

Expression Profile