RNA id: TU921615


Basic Information

Item Value
RNA id TU921615
length 1718
lncRNA type read_through
GC content 0.45
exon number 3
gene id G810017
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46305432 ~ 46316331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTCAAAAAATGTAACTACAcacactttttgttttatttcaatttatttttttgtatttttgaatTCCTGTGTAATAAACCAAATCGCTTCTACagcagtatttttatttttacattcaaTTTGTTACATTCAAGTTGAATAGTGATTCTATTTCATATTTTCAGTTTCAATGACATTTCAGTGAGACAACTCATGATTGTGGTCTTTCACTATTACGGGTGACCAAAGCACAAGACAATTGATATAGAAATCTATACAATCCAAAATATCACCTTGAGATTAAGTTGTTATTTTAGAAAGTGCCCATGTGCAGGTTTTATGTTTTAAGTCACTATGTGAAAGGGGCACACATTTTAGTTCACGGAATTATGAATGTAATCTTAAATATTTTGGGGATAGCAAGTTACTTTAGAAACAAtaaacacagaaaataaatacTGAATGAGATAAGATTAAAATGTGTAGTCTACATAATATGTACGTTGTTTGAATGAAACCTGGTATGAAATAAGAGCAATGATGTGATGATAATGATGTATAATGAATGGAGTTTTGTACTATGCGGACACAGTGATGTATTGAGGCTCCATGTTGCCAAAGTAGGATTTCTCCCACTCACTCATCAGGTCAAAGTGCAGTGGGCGATCACAGAAGGTGCAGGAGACAGTCGCCGGCCCGTTCAGAAGGAGCCCCGTTTCTTGCCACACCTCCACGAGCCTCTCTGTCAATCAAAGTGAAATGGGTCAAACACAAAGAAACTTGAGTCACGGCTAACACAGCTAGTAGTATTGGCTGTAGTATCTTATTTTAAGATTATTCAGAGATTATTCAGGGATCACATTTTTATGAATACACTGAGGAAGGATACTATTGGTAGTTGAAGTTCTCTTTCTCCGGACCCCCTGATGTGTCGAACATGACCATTGACCATTAATGGGTTGAACACCACTGGACGTATTCACAAAGAGTCTCATCTCCTACTCGGAGATGCTGGAACACAGGCCAGTTCTACGTGAAACCCTGTCAGAGCAGTAGCAGCAAGTGGCTTGGTCACTCACCCACAAAGTACTCCATCATTGCAGGGTTGTGGTGAGGGGAGGGAGCCAGACGCAGCAGCTCCTCGCCTCGGGCTACTGTCGGGTAATTGATGGCCTGGACGTAGATGTTGTGTCGCTCCAGCAAGATGTCACACACCTTGGAGTTGAGCTCCGCGTTACCAACCTTATTGGGATGATGTGGCTGGGGCAGTTGACCACAGGCAGTCCCTTCTCCAGGAGCAGCTGTCTCATGTGTTTGACATTCCTCTGGTGGGCCCTGCGCAGCGCCTGGCCCTCGGAGCTCTTCAGGACTCTCACAGACTCCAGGGCCCCAGCCAGCACCATGGGGGGCAGCGAAGTAGTGAAGATGAAACCTGCAGCGAAGGAACGCACCGTGTCCACCAGGGAAGCGCTACTGGCAATGTAGCCCCCCACGCAGCCAAAGGCTTACCCAAGGTTCCAGAGACAATGTCAATCTTGTGcatgatgttgtctctctctcccacaccggCCCCGTGGGCTCCATACAGGCCCACAGCATGGACCTCATCAACAAACGTCAAGGCCCCATAGCGATGGGCCACATCACATAGCTCCTCCAGGGGACATATAGCACCTGAGAGCGAGTGAGATGAAATAGGATGTACCACCTTTTACTGTAAATAACTGAGAGACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921685 lncRNA upstream 2268 46302964 ~ 46303164 (+) True G810083
TU921678 lncRNA upstream 10220 46294946 ~ 46295212 (+) True G810076
TU921661 lncRNA upstream 40530 46264410 ~ 46264902 (+) True G810059
TU921659 lncRNA upstream 43375 46261772 ~ 46262057 (+) True G810057
TU921658 lncRNA upstream 43692 46261501 ~ 46261740 (+) True G810056
TU921619 lncRNA downstream 3262 46313116 ~ 46316331 (+) True G810017
TU921614 lncRNA downstream 29139 46338993 ~ 46360462 (+) False G810016
TU921611 lncRNA downstream 33466 46343320 ~ 46360462 (+) False G810016
TU921612 lncRNA downstream 44643 46354497 ~ 46433129 (+) True G810016
TU921714 lncRNA downstream 83303 46393157 ~ 46394599 (+) True G810112
XM_036988151.1 mRNA upstream 685 46301264 ~ 46304747 (+) True LOC118966055
XM_021615923.2 mRNA upstream 27527 46263207 ~ 46277905 (+) False LOC110532217
XM_021615922.2 mRNA upstream 27527 46268997 ~ 46277905 (+) True LOC110532217
XM_021615915.2 mRNA upstream 55489 46207397 ~ 46249943 (+) False ccdc30
XM_021615926.2 mRNA downstream 8302 46318156 ~ 46354342 (+) True LOC110532219
XM_021615927.2 mRNA downstream 51159 46361013 ~ 46371475 (+) True LOC110532220
XM_021615928.2 mRNA downstream 76979 46386833 ~ 46389138 (+) True LOC110532221
XM_036986948.1 mRNA downstream 291960 46601814 ~ 46630668 (+) True LOC110532224
XM_036988155.1 mRNA downstream 329540 46639394 ~ 46642882 (+) False LOC110532227
TU921250 other upstream 169700 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 1852355 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2109391 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 3956646 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 3972994 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1672147 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 2235600 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2649895 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2693465 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2805283 49115137 ~ 49115618 (+) True G813139

Expression Profile