RNA id: TU921619


Basic Information

Item Value
RNA id TU921619
length 1779
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G810017
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46305432 ~ 46316331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTTGAGGACCCGGGGGTGGCTACCCATGCCCAGGTAGTCGTTACTGCACCAGACAGACACCTGGGAGCCTTCCCGCCCGGCCATGGAGTAGTCTTCGGCAAAGGGAAAGACGTCAGCTCGCCGATTCACTGTCTTAAAGATGCGGTAGGTGTGGTCGTTCTTCTTCTCAGAGATCGTCCTGTCGAAGAAGCCATCGTAGTCGAAACTGGGGCCCACTGTAGGGGTTAAAAGTATAATAGTGTCAGCAAATGATTTGGTGAAAGACTTAAAATTATTCAAGAGACATTCATATAGTTTCTCAAGTTACATGTGATTCTAGATCCAATAACTTGTTTAATATGATAAAGAATGAATCATCATGTATCCATTGAATGAAAAGAAAATTGGGTCCCACTTTACATACCGGTAGTGATACCTGAATgtggcaaattcttatttacattgacggcctaccccaggcaaacccagacgacactgggccaattgtacgccgccctatgggactcccaatcacagcacgatgtgatacagcctggattcaaaccatggactgtagtgacacctcttgcaccaaaatgcagtgccttagactgctgcgccactcgggagcccatttaCAAATCAACTCAAATTGCTTGCGTTTAAACCTCCTTTCGCTGTGCATAATTACTGCATGAGATTACGCGATTGTAAGTAGGCCTATACTTGGTAATCCGTTCCCTTTAAAAGCTGTGCAAACAGATAAGTTGTATGTAATACAACTTGTGTAAATGTATTTACACAGTACCTGCCAATGCAAAAATCATTCAACTGGTATCAAATTACCACTTAATATAACGTGTGACTGAAAACAGTTCTGTTATGCACTGTATCATGTCAACATAATTTCTTGTAGAACTACAGTGCAACTTCTCCTCTGATTGAGTGAATGCAAACGAGTCACACTGGTCTGATTCACCTATATTGTCCTTCAGGAGGTGGGACACTCTGGGGGTTTGGACCTTCGGCATGACGGAGTCCTCGAGTTCCTTCAAAAGAGATCTTTTCATACCTGGTTAGACTCCGTCGGGACGTCCTCCTGAACCTCAGGGCTCGCTCTTACCATGCCAATCTGATTGGAGACAAAGGGACATCCCTTGGACATGGAGACAGCCACCTGGGTTGCTGATTGGGCAAAATGACGCTTTGAGTCCACACTCAGGGGCAGGATGCCTGCTGACTGGGTAGAATGGATGGTCGTCTTCCTCTCCTTGGGGATTGAGGCACAAACAGTGATCTGGCGGACGATCATGGGGCATCGGTCGGCCATAGAGAGGAGTGCGGCCCCAGTTTTCAGCAAAACAGGCTTGGGGGCCGACTTCAGGAAGGGGCAGTGGTGAAGGAAAGCGGCCATGGCTCTTGAAGCAGTTTTGAATCTGGATCAACACATGAGACATAGGACATAAGACCTTTAAAACATAACATTCTGACACTTTGTTATAGTTGTAGTTTCTATGCTAAATGCTATTTACACTAGTTTAGACCTACAGTACTTTTCAACAGACAGCAACAGCAAGTTTAAGGTCACTGTAGGCTAATGTACAATAGTCCTGAAGTAGCCTATGTAATGCTATTGCCACCATCTTCCAGAATCTTTCATAACCTAACATTTTAAAGAGGAAATTAAAACGAAATATAGGACTATGTCTACTATGTTCAAGAGAGAGGGGAACACACTTTGAATCAAACTTTCAGCAATATAAGGTTTTAGTGATTTGAAATTGTTTCCGAAATGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921615 lncRNA upstream 3262 46305432 ~ 46309854 (+) False G810017
TU921685 lncRNA upstream 9952 46302964 ~ 46303164 (+) True G810083
TU921678 lncRNA upstream 17904 46294946 ~ 46295212 (+) True G810076
TU921661 lncRNA upstream 48214 46264410 ~ 46264902 (+) True G810059
TU921659 lncRNA upstream 51059 46261772 ~ 46262057 (+) True G810057
TU921614 lncRNA downstream 22662 46338993 ~ 46360462 (+) False G810016
TU921611 lncRNA downstream 26989 46343320 ~ 46360462 (+) False G810016
TU921612 lncRNA downstream 38166 46354497 ~ 46433129 (+) True G810016
TU921714 lncRNA downstream 76826 46393157 ~ 46394599 (+) True G810112
TU921850 lncRNA downstream 250982 46567313 ~ 46567630 (+) True G810243
XR_005053263.1 mRNA upstream 2341 46309012 ~ 46310775 (+) True LOC118966056
XM_036988151.1 mRNA upstream 8369 46301264 ~ 46304747 (+) True LOC118966055
XM_021615923.2 mRNA upstream 35211 46263207 ~ 46277905 (+) False LOC110532217
XM_021615922.2 mRNA upstream 35211 46268997 ~ 46277905 (+) True LOC110532217
XM_021615912.2 mRNA upstream 63173 46207436 ~ 46249943 (+) False ccdc30
XM_021615926.2 mRNA downstream 1825 46318156 ~ 46354342 (+) True LOC110532219
XM_021615927.2 mRNA downstream 44682 46361013 ~ 46371475 (+) True LOC110532220
XM_021615928.2 mRNA downstream 70502 46386833 ~ 46389138 (+) True LOC110532221
XM_036986948.1 mRNA downstream 285483 46601814 ~ 46630668 (+) True LOC110532224
XM_036988155.1 mRNA downstream 323063 46639394 ~ 46642882 (+) False LOC110532227
TU921250 other upstream 177384 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 1860039 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2117075 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 3964330 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 3980678 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1665670 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 2229123 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2643418 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2686988 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2798806 49115137 ~ 49115618 (+) True G813139

Expression Profile