RNA id: TU921612


Basic Information

Item Value
RNA id TU921612
length 3854
lncRNA type read_through
GC content 0.41
exon number 3
gene id G810016
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46338993 ~ 46433129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATGTCATGAGGTGAAAACCAGTATTTGACCTCATTGATTTGTTTAGCATACAGTGATGGTTTACATTATGGGCTCGACTCAATCCATATTGTGGATGTTTAGTGCTATAgtgtgattgaaatgtaaagatAATGCTCCCGTGTTCGCGGAGATGCCTTCATATgcagtaaacgctgcatatgtggGTTCAATTCAAAATTATCTTTACATTTAAATTGATCTATAACACTGAACTTCCGCAGTACTGAGCCCTATATCCCTGTCTGGAGGACTGAAGTATGACAACAAGAGATGCATTAAACCCTGTACATACCATTATTCCACAACAACAGATCAATTCCTCAGTAACTAATCCGAGAGGTTTCAAAAATGGTGCTTTACCTCCAGCTGTCTCAGAATCCTATTTAGAATAGctttttgaaaataaaaatgtatatactATAAACCTAATAATAGGTCTATAGTATAAGCAGCTACAGACTTTGATTTTAAGAGCTCCGAGTTGAATATGGAGCAGTTAGTGGACTTGGTTCCATGCTTCTGGATTTCTACTGATGTTTAAGCCTATTAgggagcccaattctgatattttgaccaattattggcaaaagatcagatctgattggtcaaaagaccagttAGTGACAAATGAAACCATTTGTCTTGCTCGTCTCTCATATCTTAGTTCAGCATTTGGCTATAAATCCAGAACCATGAGTCAGTCACGTAGACAAAGGGGACGTTTTCTGGCAGAGGGAGCAAGTCTCATTAGTACATTATATGACTTTAGTTAAATGGCTAGATACACTGGATAAACAATATAACAGCAATTTTCCACCACAGACAATAATCATTTACAATATGTTAATCTGTTTGTCCAAAGCATTAGAAAAGACTCAAGTTATCCAATACTTGTAGGATTGATGGGTTCTCTTATGTTTCGTATCAAAGATAACAATGAATCATTCCACTATGACAGAACCAGTGGAAATTCAAGATAGCAGAGGCGGgcagaggcagaacaacagtcTGATACAGCAGCAGCAGGCATCCACTGAGATACAGTAAATCCTTCCTCTGTCCCTAATCCCATCCCTCTACTATCTTATCTGACAAGTTTTCTATATCAGCCAATGTAAGGAACTGCTAGCTTCATAGGCTATTCACAGTATGCCCATAACTATAATAAGGTGATTattgcgtgtgtgagagagagaaagagagagagagatctgggaAGATGAGATGCATCAACATAAACAGAAGGGGAACAATCCTCCTGGTTCCCTACTGGATAAGCCACAAAACAGCTGAAATCTGGAAAACTACAGAGGAAGGATTTGTCAGGGAAAGTACTTAACCCCTTATTTGGAGGTCATTGCCATTTGAGTTTGAATTTTAGATTTGGCtatgtcatcataggtacacttcaactatgacagacaaaattagaaaaaaaaatccagaaaatcacattgtaggatttttaatgaatttatttgcaaattaaattcctaattagtgaccttaattcatcaatcaagtacaagggtggagcgtAAACCTGTagacactcggccctctgtggaatgagtttgacacgtgatcTAGCTGATCTAGTATAATTATTAGTCCAAAATTTCAAATGAGAGGATTCTATTGGAcgaattcaggtatgtttatccccgtttcgttccgtttACTTGAGTTTGtgttagagtttttttttttttttttacaggaacAGTGCACATTAAttaacgtttcagtaaaagtgctggttttagccagccagctaattttcaaccgcagtccctgggcaggttattaaaaacaattacaacaacaatacagacaatcattgtgcagtgagcacacgcagagcaacatagaacaagcaagacgtagaatgcagacagagcaacataggacaagcaagacgtagcatgcagacagagaaacatagcacAAAAAACAACAAGACAAAATATATAAAAGCAACTAAATGTTTCCaaacctcacaagctacagacaacatggaaagcgacaATACACAactagggattatgttcacaaatctgattggcctttagccatgtcttcatgttttttgtgaaagtgtgatggGTGGTGCagttacagtatgtgtgtctgatggcagtgtattccaaaCATgtgaagctctcacagagaaagcagattgactaaaggtgcttttgcttaagggaactatacagtcacctctcatggcagaccttgtggatctgctgctaTATGTTTgagttttctgtttaacaaaagtactgagtggagggggagccaggccatttaggatcttgaatacaagacatgtgtcggtgtattgcacaatcATTTTCCTACTTAAGAGCTCATGCTtcctgaggatgtaacagtgatgatggctattgggcttcctatcaaccACTTTGAGAgtctgtttgtagacagactgaatgggttttaatgCTGTACAGCAAGCTtaggcccaactagtcaagcagtatgttaagcgagggagtatcatagatttgaagtacagttttgctacctctgtagtcaaacaatttcgtataaattggaaattagctaggttgaatttggttatttgaattacctttttcacctgctttttaaaagagaggttggaatcaagtacgatgccaaggtacttcaaatcagataccacctggagcttctcccctgacacatagacatctggctcagtagcatcagttgctctctttgtgaagaacatgcagacagtttttttcacattgagatgcaaacatgagtcactgagccactttgtaacctggactaTTACAgaagtgagttcttgtgcagcttgttgtttgctctttgcatgcacatatatcactgtatcatctgcatacatttgaacttcagacccagtacagacagaaggcagatcattaatgtacaggctgaacagaagggtccccagtattgacccttggggcacacccacatcatagctaagagtgggcgacagctcattgctcactctgacacactgagttctgccttcaaggtatgatttcatccatctcaaggcatcggggGAAAAATTGAACTTGGACAAATTGGTGATAagaacagtatcaaaagccttccttaggtccagaaacacagccccagcaacgcccccccccccccccccccttgttatTATGGCCGACATGCATACCCTTGGAAACATCctccatacccttggaaacacccccTAGTTTTTAGGAAAAGTagagtccagcccaaacacatctttggctttaaTGTTCTTTAGTGGGCTAATCATCTTGTTCACCTCTtactcagaaacctcccttatgatgaagacaggttgagtgtcattcactagccctgagcccaagaaaccagtggaggtgttctgtgtcagtaccctgacagagtcaataaagtagtaattgaaggctattgctatttcgactgcatcctgtgtAAGATTGTCattcaccatgatttctagtctttttgcggtgttactatggtctttccctcTTTTTTAGGAATCTCCCAGATCAGCATTCAGAAGGCTTGTTGACTAGGCTACTCGCTGAGAACGACGTTTCTCCATTCTCGCCTAGGGGAAAGTCCCCGGACACATGGCAGAAAGTGCCCTGCGTTGGTTCGCAGTTACTCGGCTTGTGCGTTACCATTTGTGGCTAAGATGTTCCATGGGACGGAGCTTGGTTCTCACGAGTCTCATTTGTCAGTGCGATAGAAATGCAAGTAGTACTAGCGCATGAACAGAACGGGGCTCATTCTCAGAATGCActctggaagcaacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921617 lncRNA upstream 38166 46305432 ~ 46316331 (+) False G810017
TU921619 lncRNA upstream 38166 46313116 ~ 46316331 (+) True G810017
TU921615 lncRNA upstream 44643 46305432 ~ 46309854 (+) False G810017
TU921685 lncRNA upstream 51333 46302964 ~ 46303164 (+) True G810083
TU921678 lncRNA upstream 59285 46294946 ~ 46295212 (+) True G810076
TU921850 lncRNA downstream 134184 46567313 ~ 46567630 (+) True G810243
TU921854 lncRNA downstream 146572 46579701 ~ 46585007 (+) True G810247
TU921872 lncRNA downstream 173344 46606473 ~ 46617960 (+) True G810265
TU921880 lncRNA downstream 196349 46629478 ~ 46634021 (+) True G810273
TU921781 lncRNA downstream 210355 46643484 ~ 46644602 (+) True G810178
XM_021615926.2 mRNA upstream 155 46318156 ~ 46354342 (+) True LOC110532219
XR_005053263.1 mRNA upstream 43722 46309012 ~ 46310775 (+) True LOC118966056
XM_036988151.1 mRNA upstream 49750 46301264 ~ 46304747 (+) True LOC118966055
XM_021615923.2 mRNA upstream 76592 46263207 ~ 46277905 (+) False LOC110532217
XM_021615922.2 mRNA upstream 76592 46268997 ~ 46277905 (+) True LOC110532217
XM_036986948.1 mRNA downstream 168685 46601814 ~ 46630668 (+) True LOC110532224
XM_036988155.1 mRNA downstream 206265 46639394 ~ 46642882 (+) False LOC110532227
XM_036988156.1 mRNA downstream 206292 46639421 ~ 46642882 (+) True LOC110532227
XM_021615940.2 mRNA downstream 224858 46657987 ~ 46712041 (+) True LOC110532228
XM_036988165.1 mRNA downstream 569013 47002142 ~ 47095401 (+) False LOC110532233
TU921250 other upstream 218765 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 1901420 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2158456 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4005711 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4022059 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1548872 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 2112325 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2526620 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2570190 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2682008 49115137 ~ 49115618 (+) True G813139

Expression Profile