RNA id: TU921850


Basic Information

Item Value
RNA id TU921850
length 318
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G810243
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46567313 ~ 46567630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Tcaatctgtcatgtactgtcatgttgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgtgttaggttaccttttctcccccgctttcccccagctgtcccttgtctcctctaactacccattcaccccgttccccacctgttcccttttttccctctgattaggtccctatatctctctctgtttctgctcctgtccttgtcggattcttgtttgtttgtgtcattcatgcctgaaccagactgtcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtccatctgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921612 lncRNA upstream 134184 46354497 ~ 46433129 (+) True G810016
TU921714 lncRNA upstream 172714 46393157 ~ 46394599 (+) True G810112
TU921614 lncRNA upstream 206851 46338993 ~ 46360462 (+) False G810016
TU921611 lncRNA upstream 206851 46343320 ~ 46360462 (+) False G810016
TU921617 lncRNA upstream 250982 46305432 ~ 46316331 (+) False G810017
TU921854 lncRNA downstream 12071 46579701 ~ 46585007 (+) True G810247
TU921872 lncRNA downstream 38843 46606473 ~ 46617960 (+) True G810265
TU921880 lncRNA downstream 61848 46629478 ~ 46634021 (+) True G810273
TU921781 lncRNA downstream 75854 46643484 ~ 46644602 (+) True G810178
TU921959 lncRNA downstream 170896 46738526 ~ 46792059 (+) True G810345
XM_021615928.2 mRNA upstream 178175 46386833 ~ 46389138 (+) True LOC110532221
XM_021615927.2 mRNA upstream 195838 46361013 ~ 46371475 (+) True LOC110532220
XM_021615926.2 mRNA upstream 212971 46318156 ~ 46354342 (+) True LOC110532219
XR_005053263.1 mRNA upstream 256538 46309012 ~ 46310775 (+) True LOC118966056
XM_036988151.1 mRNA upstream 262566 46301264 ~ 46304747 (+) True LOC118966055
XM_036986948.1 mRNA downstream 34184 46601814 ~ 46630668 (+) True LOC110532224
XM_036988155.1 mRNA downstream 71764 46639394 ~ 46642882 (+) False LOC110532227
XM_036988156.1 mRNA downstream 71791 46639421 ~ 46642882 (+) True LOC110532227
XM_021615940.2 mRNA downstream 90357 46657987 ~ 46712041 (+) True LOC110532228
XM_036988165.1 mRNA downstream 434512 47002142 ~ 47095401 (+) False LOC110532233
TU921250 other upstream 431581 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2114236 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2371272 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4218527 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4234875 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1414371 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1977824 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2392119 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2435689 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2547507 49115137 ~ 49115618 (+) True G813139

Expression Profile