RNA id: TU921872


Basic Information

Item Value
RNA id TU921872
length 393
lncRNA type sense_over
GC content 0.38
exon number 3
gene id G810265
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46606473 ~ 46617960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatacaccataaACATTTTGGAATGGGGACATTTAAGACCAGTAAAGCTCATATTTAATTTAGAGTGATCAACACAATGTTTAGTATAGAGCTTCTGTAATACACATGATTTCCATTGTTCTTCTTGTGACATTCAAGGtgtgggttgatggtcactagacttgATGATACATTTTATGGATTGTTCTCATATCTGTTGACAGAGATTGACGCCAGACTGGAGGTCCCAGTAGAAGGACCGAGGGCACACTGATTATTCActgttgtattgtattgatgACATGGTGGAACACTGTGTGATTCTGTAGCAGCTGACAATGTCACCGCTTTCTGTTTTGACTTCCTACAAATGCAAATGCCTATTTATCGCAACCATCTCCTCACAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921854 lncRNA upstream 21466 46579701 ~ 46585007 (+) True G810247
TU921850 lncRNA upstream 38843 46567313 ~ 46567630 (+) True G810243
TU921612 lncRNA upstream 173344 46354497 ~ 46433129 (+) True G810016
TU921714 lncRNA upstream 211874 46393157 ~ 46394599 (+) True G810112
TU921614 lncRNA upstream 246011 46338993 ~ 46360462 (+) False G810016
TU921880 lncRNA downstream 11518 46629478 ~ 46634021 (+) True G810273
TU921781 lncRNA downstream 25524 46643484 ~ 46644602 (+) True G810178
TU921959 lncRNA downstream 120566 46738526 ~ 46792059 (+) True G810345
TU922121 lncRNA downstream 348708 46966668 ~ 46967642 (+) True G810485
TU922729 lncRNA downstream 434596 47052556 ~ 47053128 (+) True G811030
XM_021615928.2 mRNA upstream 217335 46386833 ~ 46389138 (+) True LOC110532221
XM_021615927.2 mRNA upstream 234998 46361013 ~ 46371475 (+) True LOC110532220
XM_021615926.2 mRNA upstream 252131 46318156 ~ 46354342 (+) True LOC110532219
XR_005053263.1 mRNA upstream 295698 46309012 ~ 46310775 (+) True LOC118966056
XM_036988151.1 mRNA upstream 301726 46301264 ~ 46304747 (+) True LOC118966055
XM_036988155.1 mRNA downstream 21434 46639394 ~ 46642882 (+) False LOC110532227
XM_036988156.1 mRNA downstream 21461 46639421 ~ 46642882 (+) True LOC110532227
XM_021615940.2 mRNA downstream 40027 46657987 ~ 46712041 (+) True LOC110532228
XM_036988165.1 mRNA downstream 384182 47002142 ~ 47095401 (+) False LOC110532233
XM_036988164.1 mRNA downstream 384183 47002143 ~ 47095401 (+) False LOC110532233
TU921250 other upstream 470741 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2153396 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2410432 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4257687 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4274035 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1364041 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1927494 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2341789 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2385359 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2497177 49115137 ~ 49115618 (+) True G813139

Expression Profile