RNA id: TU921880


Basic Information

Item Value
RNA id TU921880
length 444
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G810273
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46629478 ~ 46634021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAAAATATTTCAGGGAAAAGACCTCAATGGAAAGAATCAGTGTACGGATGATTTCCAGTGTTCTACTTGTGACACTCAAGGTGTGGAttgatggtcactagacttgATGCTGAATGTTATGGATTGTTCTCATATCTGTTGATAGAGATTAACGCCGGACTTGAGGTACAAGGGCCGAGGACACACTGATTATTCACTGTTATGTTGTATTGATGACATTCTGTGAACACTGTGTGATTCTGTAGCAGCTGACAGCCTGTTTGTTTTGACTTCCTACAAGCCTCTAgagctggtgtttacagaacatttgtTGCTGTCTGATTAGAATGTAAAGGGCATGTCTCCAAGATGCCAGTTAGACATTTTCTATGCTTCTGTGCTGGAAGTGTCTCCCTGTTGCAGCTTGTAATAAACTGGATATAATTTTtttcccgtctcttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921872 lncRNA upstream 11518 46606473 ~ 46617960 (+) True G810265
TU921854 lncRNA upstream 44471 46579701 ~ 46585007 (+) True G810247
TU921850 lncRNA upstream 61848 46567313 ~ 46567630 (+) True G810243
TU921612 lncRNA upstream 196349 46354497 ~ 46433129 (+) True G810016
TU921714 lncRNA upstream 234879 46393157 ~ 46394599 (+) True G810112
TU921781 lncRNA downstream 9463 46643484 ~ 46644602 (+) True G810178
TU921959 lncRNA downstream 104505 46738526 ~ 46792059 (+) True G810345
TU922121 lncRNA downstream 332647 46966668 ~ 46967642 (+) True G810485
TU922729 lncRNA downstream 418535 47052556 ~ 47053128 (+) True G811030
TU922779 lncRNA downstream 426295 47060316 ~ 47063070 (+) True G811071
XM_021615928.2 mRNA upstream 240340 46386833 ~ 46389138 (+) True LOC110532221
XM_021615927.2 mRNA upstream 258003 46361013 ~ 46371475 (+) True LOC110532220
XM_021615926.2 mRNA upstream 275136 46318156 ~ 46354342 (+) True LOC110532219
XR_005053263.1 mRNA upstream 318703 46309012 ~ 46310775 (+) True LOC118966056
XM_036988151.1 mRNA upstream 324731 46301264 ~ 46304747 (+) True LOC118966055
XM_036988155.1 mRNA downstream 5373 46639394 ~ 46642882 (+) False LOC110532227
XM_036988156.1 mRNA downstream 5400 46639421 ~ 46642882 (+) True LOC110532227
XM_021615940.2 mRNA downstream 23966 46657987 ~ 46712041 (+) True LOC110532228
XM_036988165.1 mRNA downstream 368121 47002142 ~ 47095401 (+) False LOC110532233
XM_036988164.1 mRNA downstream 368122 47002143 ~ 47095401 (+) False LOC110532233
TU921250 other upstream 493746 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2176401 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2433437 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4280692 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4297040 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1347980 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1911433 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 2325728 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2369298 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2481116 49115137 ~ 49115618 (+) True G813139

Expression Profile