RNA id: TU922121


Basic Information

Item Value
RNA id TU922121
length 240
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G810485
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46966668 ~ 46967642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggtttaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921959 lncRNA upstream 174609 46738526 ~ 46792059 (+) True G810345
TU921781 lncRNA upstream 322066 46643484 ~ 46644602 (+) True G810178
TU921880 lncRNA upstream 332647 46629478 ~ 46634021 (+) True G810273
TU921872 lncRNA upstream 348708 46606473 ~ 46617960 (+) True G810265
TU921854 lncRNA upstream 381661 46579701 ~ 46585007 (+) True G810247
TU922729 lncRNA downstream 84914 47052556 ~ 47053128 (+) True G811030
TU922779 lncRNA downstream 92674 47060316 ~ 47063070 (+) True G811071
TU922792 lncRNA downstream 116752 47084394 ~ 47085555 (+) True G811083
TU922728 lncRNA downstream 130808 47098450 ~ 47098729 (+) True G811029
TU922799 lncRNA downstream 132472 47100114 ~ 47100348 (+) True G811090
XM_021615940.2 mRNA upstream 254627 46657987 ~ 46712041 (+) True LOC110532228
XM_036988155.1 mRNA upstream 323786 46639394 ~ 46642882 (+) False LOC110532227
XM_036988156.1 mRNA upstream 323786 46639421 ~ 46642882 (+) True LOC110532227
XM_036986948.1 mRNA upstream 336000 46601814 ~ 46630668 (+) True LOC110532224
XM_021615928.2 mRNA upstream 577530 46386833 ~ 46389138 (+) True LOC110532221
XM_036988165.1 mRNA downstream 34500 47002142 ~ 47095401 (+) False LOC110532233
XM_036988164.1 mRNA downstream 34501 47002143 ~ 47095401 (+) False LOC110532233
XM_036988163.1 mRNA downstream 34503 47002145 ~ 47095401 (+) False LOC110532233
XM_036988167.1 mRNA downstream 35828 47003470 ~ 47095401 (+) False LOC110532233
XM_036988166.1 mRNA downstream 35829 47003471 ~ 47095401 (+) True LOC110532233
TU921250 other upstream 830936 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2513591 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2770627 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4617882 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4634230 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 1014359 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1577812 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1992107 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 2035677 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2147495 49115137 ~ 49115618 (+) True G813139

Expression Profile