RNA id: TU922728


Basic Information

Item Value
RNA id TU922728
length 280
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G811029
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47098450 ~ 47098729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaaataaggcatacttttatgactgctgaataccaactatgaATCCCTTAGATCACGTATTTTCAGGAAGGGATAACTCGCGAAGCAACAGCTGCTCTCGATATCCCCTCAATATCAGCCATTCTTCGGTCTCTTCTGTAGAAGGCgtacaaaaaaaaacagaccaGACAAGTAGATGTGCAGTGGATTATGGTCACaaactaggtttccatccaattggtgacagattttaaTGTGAATATGCTTAAATCACCATAAAAACCATTTGCACATTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922792 lncRNA upstream 12895 47084394 ~ 47085555 (+) True G811083
TU922779 lncRNA upstream 35380 47060316 ~ 47063070 (+) True G811071
TU922729 lncRNA upstream 45322 47052556 ~ 47053128 (+) True G811030
TU922121 lncRNA upstream 130808 46966668 ~ 46967642 (+) True G810485
TU921959 lncRNA upstream 306391 46738526 ~ 46792059 (+) True G810345
TU922799 lncRNA downstream 1385 47100114 ~ 47100348 (+) True G811090
TU922767 lncRNA downstream 15441 47114170 ~ 47115950 (+) True G811067
TU922823 lncRNA downstream 47067 47145796 ~ 47146413 (+) True G811108
TU922879 lncRNA downstream 153081 47251810 ~ 47252040 (+) True G811161
TU922882 lncRNA downstream 158094 47256823 ~ 47257061 (+) True G811164
XM_036988165.1 mRNA upstream 3049 47002142 ~ 47095401 (+) False LOC110532233
XM_036988164.1 mRNA upstream 3049 47002143 ~ 47095401 (+) False LOC110532233
XM_036988163.1 mRNA upstream 3049 47002145 ~ 47095401 (+) False LOC110532233
XM_036988167.1 mRNA upstream 3049 47003470 ~ 47095401 (+) False LOC110532233
XM_036988166.1 mRNA upstream 3049 47003471 ~ 47095401 (+) True LOC110532233
XR_005053450.1 mRNA downstream 9622 47108351 ~ 47111306 (+) True LOC118966184
XM_036988172.1 mRNA downstream 51217 47149946 ~ 47181808 (+) False klhl17
XM_036988173.1 mRNA downstream 51217 47149946 ~ 47181808 (+) False klhl17
XM_036988174.1 mRNA downstream 51217 47149946 ~ 47181808 (+) False klhl17
XM_036988176.1 mRNA downstream 51218 47149947 ~ 47181808 (+) False klhl17
TU921250 other upstream 962718 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2645373 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2902409 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4749664 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4766012 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 883272 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1446725 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1861020 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1904590 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2016408 49115137 ~ 49115618 (+) True G813139

Expression Profile