RNA id: TU922799


Basic Information

Item Value
RNA id TU922799
length 235
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G811090
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47100114 ~ 47100348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggaagaaaacctgatggagtctgcaaaagacctgagactgggatggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttacaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922728 lncRNA upstream 1385 47098450 ~ 47098729 (+) True G811029
TU922792 lncRNA upstream 14559 47084394 ~ 47085555 (+) True G811083
TU922779 lncRNA upstream 37044 47060316 ~ 47063070 (+) True G811071
TU922729 lncRNA upstream 46986 47052556 ~ 47053128 (+) True G811030
TU922121 lncRNA upstream 132472 46966668 ~ 46967642 (+) True G810485
TU922767 lncRNA downstream 13822 47114170 ~ 47115950 (+) True G811067
TU922823 lncRNA downstream 45448 47145796 ~ 47146413 (+) True G811108
TU922879 lncRNA downstream 151462 47251810 ~ 47252040 (+) True G811161
TU922882 lncRNA downstream 156475 47256823 ~ 47257061 (+) True G811164
TU922886 lncRNA downstream 160737 47261085 ~ 47261350 (+) True G811168
XM_036988165.1 mRNA upstream 4713 47002142 ~ 47095401 (+) False LOC110532233
XR_005053450.1 mRNA downstream 8003 47108351 ~ 47111306 (+) True LOC118966184
XM_036988172.1 mRNA downstream 49598 47149946 ~ 47181808 (+) False klhl17
XM_036988173.1 mRNA downstream 49598 47149946 ~ 47181808 (+) False klhl17
XM_036988174.1 mRNA downstream 49598 47149946 ~ 47181808 (+) False klhl17
XM_036988176.1 mRNA downstream 49599 47149947 ~ 47181808 (+) False klhl17
TU921250 other upstream 964382 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2647037 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2904073 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4751328 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4767676 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 881653 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1445106 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1859401 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1902971 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2014789 49115137 ~ 49115618 (+) True G813139

Expression Profile