RNA id: TU922767


Basic Information

Item Value
RNA id TU922767
length 1052
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G811067
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47114170 ~ 47115950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAGGaataatgttttattttctaCAATTGCATGGTCAGTTTGTAATGTGCAATTGCATTAAGAACATGTTTGTACTGTACACATTGATGGAGCAAACCAAAACAAGTTATAGTAGAAAGGAGTCCACAGGGAAAGTAGTAATGATTGAATGTACGGAAAGATGGGCTCCGAGCCAACACTCTTCTCTCCACCCCCaatcgttgtgtgtgtgtgtgtcagtccTGGTCGGAGAGCTCCAGGTCTTCCACCAAGTCCTCGTCTCCCTCTGCCAACTCTTTCAGAGCAATGCTAGACAGCTGTTTGGGTGACTTCGAGGCTTTAGccccctcttcttcttcatcatcatcatcaccaccaccaccatcatcatCTGAAGCACCATCATGGTCTTCCCCCACCCCCTCATCGTCGCTCAGGTCAGACAGCTCTTGAAGAAGATCAGCATCATCGTCATCCTCCTCGTCAGAGCCTCCCTTTTTGTCTGGCAAGAAGAAAGAGAAATCCAATATCAAGTAACAGTTACTACTCCTCATTAGCTTTGACTTGGTTTTATTCAGATCGGGGTTTCCGTATGGAAAATGTGCTGCCGGATATTTGACCGACAACATTTCATTTACCGGACAGTATAGAAATTTACCGGATATGCACTGGGCGCATAACCTGATTAGGGGTTCCACCCACGGTgatcagaatgacagaaatcacatttagaatatggttattcatattaacagaacatgcaagttgAGGATTCAATGATGTGCGGTCCTTCTTAACGAATTTGGCTGTGCACTTTGAacatgttagaataactgtccacatttacttttcctcagccaacaagacgagtaacaaaacagcaaaatcactagtcTTTGTCAATCTACTAGAAAAGTTTAGgctacctattctattggtcagtttGTCGAGAAAGAAATAGTCTATTCCAAACCGACTCTGGGACAGCTGTGGGACGATAAGATgaaaattcatacaaccagtacatgtaaaataaaaacaaaaaatgccATGaatctgatgcaacagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922799 lncRNA upstream 13822 47100114 ~ 47100348 (+) True G811090
TU922728 lncRNA upstream 15441 47098450 ~ 47098729 (+) True G811029
TU922792 lncRNA upstream 28615 47084394 ~ 47085555 (+) True G811083
TU922779 lncRNA upstream 51100 47060316 ~ 47063070 (+) True G811071
TU922729 lncRNA upstream 61042 47052556 ~ 47053128 (+) True G811030
TU922823 lncRNA downstream 29846 47145796 ~ 47146413 (+) True G811108
TU922879 lncRNA downstream 135860 47251810 ~ 47252040 (+) True G811161
TU922882 lncRNA downstream 140873 47256823 ~ 47257061 (+) True G811164
TU922886 lncRNA downstream 145135 47261085 ~ 47261350 (+) True G811168
TU922891 lncRNA downstream 155175 47271125 ~ 47271346 (+) True G811173
XR_005053450.1 mRNA upstream 2864 47108351 ~ 47111306 (+) True LOC118966184
XM_036988165.1 mRNA upstream 18769 47002142 ~ 47095401 (+) False LOC110532233
XM_036988172.1 mRNA downstream 33996 47149946 ~ 47181808 (+) False klhl17
XM_036988173.1 mRNA downstream 33996 47149946 ~ 47181808 (+) False klhl17
XM_036988174.1 mRNA downstream 33996 47149946 ~ 47181808 (+) False klhl17
XM_036988176.1 mRNA downstream 33997 47149947 ~ 47181808 (+) False klhl17
XM_036988177.1 mRNA downstream 33997 47149947 ~ 47181808 (+) False klhl17
TU921250 other upstream 978438 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2661093 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2918129 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4765384 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4781732 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 866051 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1429504 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1843799 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1887369 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1999187 49115137 ~ 49115618 (+) True G813139

Expression Profile