RNA id: TU922891


Basic Information

Item Value
RNA id TU922891
length 222
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G811173
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47271125 ~ 47271346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTATACATGAGGAACAGCGGTTCCTTGTTTTTGCCCTCAGTTGTTTGCCAGACAAAGTTCTTGTCAAATACATAACTGGTTTGTTGGGAATTTTAGGACTTTTGGTGGACTACTTATTCAAAATTCCTTTTATCCGTTTTGCTTGATTGATTAAGCTCGTTTTTTCCCCTCTAAACTAGCTTTTTCTGTCACTAGAGGTGATGATGTTTTCCCCCTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922886 lncRNA upstream 9775 47261085 ~ 47261350 (+) True G811168
TU922882 lncRNA upstream 14064 47256823 ~ 47257061 (+) True G811164
TU922879 lncRNA upstream 19085 47251810 ~ 47252040 (+) True G811161
TU922823 lncRNA upstream 124712 47145796 ~ 47146413 (+) True G811108
TU922767 lncRNA upstream 155175 47114170 ~ 47115950 (+) True G811067
TU923126 lncRNA downstream 42803 47314149 ~ 47314379 (+) True G811382
TU923141 lncRNA downstream 56077 47327423 ~ 47327676 (+) True G811394
TU923157 lncRNA downstream 62369 47333715 ~ 47334026 (+) True G811409
TU923160 lncRNA downstream 64134 47335480 ~ 47335792 (+) True G811412
TU923163 lncRNA downstream 66397 47337743 ~ 47337942 (+) True G811415
XM_021615957.2 mRNA upstream 51951 47191735 ~ 47219174 (+) False LOC110532236
XM_036988179.1 mRNA upstream 51951 47191735 ~ 47219174 (+) True LOC110532236
XM_036988176.1 mRNA upstream 89317 47149947 ~ 47181808 (+) False klhl17
XM_021615964.2 mRNA downstream 307996 47579342 ~ 47589218 (+) True LOC110532242
XM_021617147.2 mRNA downstream 354986 47626332 ~ 47627942 (+) True LOC110533017
XM_021617148.2 mRNA downstream 364024 47635370 ~ 47636413 (+) True LOC110533018
XM_036988182.1 mRNA downstream 408194 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA downstream 408194 47679540 ~ 47694148 (+) False LOC110532243
TU921250 other upstream 1135393 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2818048 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3075084 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4922339 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4938687 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 710655 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1274108 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1688403 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1731973 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1843791 49115137 ~ 49115618 (+) True G813139

Expression Profile