RNA id: TU923160


Basic Information

Item Value
RNA id TU923160
length 313
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G811412
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47335480 ~ 47335792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttccaataaaaaataaaataaaaaagacagcaatacaaacaatgacattcattgtactgttgaatgggatggccaatttagaggacaaaacaaaacttaactcacacatacacaaaataaaacaaaatcctattaggtggtacatgtataagaagacagcatatagtcattacaagcagtgtagttaagccaaaaataaatattgagtggagtacagcacagagtagcagcagatcgtcaacccagttatgaagcgggactagaccatttatccagtatcggctgccatattttgtaaaacattggacttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923157 lncRNA upstream 1454 47333715 ~ 47334026 (+) True G811409
TU923141 lncRNA upstream 7804 47327423 ~ 47327676 (+) True G811394
TU923126 lncRNA upstream 21101 47314149 ~ 47314379 (+) True G811382
TU922891 lncRNA upstream 64134 47271125 ~ 47271346 (+) True G811173
TU922886 lncRNA upstream 74130 47261085 ~ 47261350 (+) True G811168
TU923163 lncRNA downstream 1951 47337743 ~ 47337942 (+) True G811415
TU923164 lncRNA downstream 2165 47337957 ~ 47338180 (+) True G811416
TU923185 lncRNA downstream 15291 47351083 ~ 47351772 (+) True G811437
TU923244 lncRNA downstream 73621 47409413 ~ 47411226 (+) False G811492
TU923240 lncRNA downstream 73656 47409448 ~ 47411226 (+) False G811492
XM_021615957.2 mRNA upstream 116306 47191735 ~ 47219174 (+) False LOC110532236
XM_036988179.1 mRNA upstream 116306 47191735 ~ 47219174 (+) True LOC110532236
XM_036988176.1 mRNA upstream 153672 47149947 ~ 47181808 (+) False klhl17
XM_021615964.2 mRNA downstream 243550 47579342 ~ 47589218 (+) True LOC110532242
XM_021617147.2 mRNA downstream 290540 47626332 ~ 47627942 (+) True LOC110533017
XM_021617148.2 mRNA downstream 299578 47635370 ~ 47636413 (+) True LOC110533018
XM_036988182.1 mRNA downstream 343748 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA downstream 343748 47679540 ~ 47694148 (+) False LOC110532243
TU921250 other upstream 1199748 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2882403 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3139439 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4986694 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 5003042 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 646209 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1209662 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1623957 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1667527 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1779345 49115137 ~ 49115618 (+) True G813139

Expression Profile