RNA id: TU923244


Basic Information

Item Value
RNA id TU923244
length 1292
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G811492
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47409413 ~ 47411226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAGTATAAGTACAACATTATTTTATTGTAGACGTGAACACATTTACATACATGCAATGTACAGACAAATGCACACAACAGTTAAGCATGGTACATGATTTTCAACAACTTAACTGAATTTTACAGTAAATAATGCCGCAAACCTCTGCATAACTTTGTCCTTTTTGGAATTTGACCCAGAAATGTCCTCTTATACAGGGCAAACTAGAAAATGTGTACCAGTGTCTGGTAACTCTTGAGTACCTTTTGAGAGTCGACCACATAACATGAAGTATAGCAGAGTCAACCCCATAACAAAAAGTATAGAAGAGTCAACCCAGTCACATAAAGTGTAGCAGTGTCAACCCCGTAGCGTGAAGTGTAGCAGCGTCAACCCCGTAGCATGATGTGTAGCAGTGTCAACCCCGTAGTGTGACGTGTAGCAGCGTCAACCCCGTAGTGTGAAGTGTAGCAGCGTCAACCCCGTAGCATGATGTGTAGCAGTGTCAACCCCGTAGCGTGAAGTGTAGCAGCGTCAACCCCGTAGCGTGAAGTGTAGCAGCGTCAACCCCGTAGTGTGAAGTGTAGCAGCGTCAATCCCGTAGCGTGAAATGTAGCAGCGTCAACCCCGTAGTGTGAAGTGTAGCAGCGTCAATCCCGTAGTGTGAAGTGTAGCAGCGTCAATCCCGTAGTGTGAAGTGTAGCAGCGTCAACCCCGTAGCGTGAAGTGTAGCAGTGTCGACCCGGTAGCGTGAAGTGTAGCAGAGTTAACCCCGTAGCGTGAAGTGCAGCAGCGTCAACCCCGTAGTGTGAAGTGTAGCAGCGTCAACCCCGTAGCGTGAAGTGTAGCAGAGTCAACCCTGTAACGTGAAGAGTAGGATAGTCAACCCCATCAAGCAAAATGTAGAAGAGTCAACCCCGTAGCGTGAAGTGTAGAATAATCAATCCTATGACGTCAAGTGTAGTGTTATATGTGAACTCCATTGTTTCATCAATGTCTGCGATTAGACAACTCCATAAATGGCATCTACCAGTTCATAGGTCCCGGCGCTGACATCAATAGAATGTCTCGGTACAAATTATCTGTTGACACCTACTGGTATTTAGTTCATCAAGTCCATGCCATTGCACTCCCATCTCTGTATAAACAGTCTATTGTTTTGAGTGTGTCAGTTCAATTTCGAACTCGGTGGCCTCTAGAGGTGACCAGTAATCCCCAGCTGGGGGTCAGTCAGTAGGGGGTGCTATACTGGAACAGGAGTGTGTGAGTGCTTATTTTCATGGTTTCTGTTGGGACTGCTGTGGAGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923185 lncRNA upstream 57641 47351083 ~ 47351772 (+) True G811437
TU923164 lncRNA upstream 71233 47337957 ~ 47338180 (+) True G811416
TU923163 lncRNA upstream 71471 47337743 ~ 47337942 (+) True G811415
TU923160 lncRNA upstream 73621 47335480 ~ 47335792 (+) True G811412
TU923157 lncRNA upstream 75387 47333715 ~ 47334026 (+) True G811409
TU923429 lncRNA downstream 123433 47534659 ~ 47534899 (+) True G811668
TU923435 lncRNA downstream 130212 47541438 ~ 47541832 (+) True G811674
TU923452 lncRNA downstream 161048 47572274 ~ 47575361 (+) True G811690
TU923681 lncRNA downstream 296136 47707362 ~ 47766995 (+) True G811875
TU923683 lncRNA downstream 309568 47720794 ~ 47731492 (+) True G811877
XM_021615957.2 mRNA upstream 190239 47191735 ~ 47219174 (+) False LOC110532236
XM_036988179.1 mRNA upstream 190239 47191735 ~ 47219174 (+) True LOC110532236
XM_036988176.1 mRNA upstream 227605 47149947 ~ 47181808 (+) False klhl17
XM_021615964.2 mRNA downstream 168116 47579342 ~ 47589218 (+) True LOC110532242
XM_021617147.2 mRNA downstream 215106 47626332 ~ 47627942 (+) True LOC110533017
XM_021617148.2 mRNA downstream 224144 47635370 ~ 47636413 (+) True LOC110533018
XM_036988182.1 mRNA downstream 268314 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA downstream 268314 47679540 ~ 47694148 (+) False LOC110532243
TU921250 other upstream 1273681 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2956336 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3213372 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5060627 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 5076975 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 570775 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1134228 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1548523 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1592093 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1703911 49115137 ~ 49115618 (+) True G813139

Expression Profile