RNA id: TU923429


Basic Information

Item Value
RNA id TU923429
length 241
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G811668
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47534659 ~ 47534899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaacaacatcctaaagattgattctatacatcgtttgacatgtttctacggactgtaacggaactttttgacattacGTCTGCTCCTAGACTttgtgactttggatttgtttacaaaacgcgctaacaaaagtagctatttggacataaatgatggacattatcgaacaaaacaaacatttattgtggaactgggattcctgggagtgcagtctgatgaagatcatcaaaggtaagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923244 lncRNA upstream 123433 47409413 ~ 47411226 (+) False G811492
TU923240 lncRNA upstream 123433 47409448 ~ 47411226 (+) False G811492
TU923245 lncRNA upstream 123433 47409448 ~ 47411226 (+) True G811492
TU923185 lncRNA upstream 182887 47351083 ~ 47351772 (+) True G811437
TU923164 lncRNA upstream 196479 47337957 ~ 47338180 (+) True G811416
TU923435 lncRNA downstream 6539 47541438 ~ 47541832 (+) True G811674
TU923452 lncRNA downstream 37375 47572274 ~ 47575361 (+) True G811690
TU923681 lncRNA downstream 172463 47707362 ~ 47766995 (+) True G811875
TU923683 lncRNA downstream 185895 47720794 ~ 47731492 (+) True G811877
TU923862 lncRNA downstream 368485 47903384 ~ 47927961 (+) True G812051
XM_021615957.2 mRNA upstream 315485 47191735 ~ 47219174 (+) False LOC110532236
XM_036988179.1 mRNA upstream 315485 47191735 ~ 47219174 (+) True LOC110532236
XM_036988176.1 mRNA upstream 352851 47149947 ~ 47181808 (+) False klhl17
XM_021615964.2 mRNA downstream 44443 47579342 ~ 47589218 (+) True LOC110532242
XM_021617147.2 mRNA downstream 91433 47626332 ~ 47627942 (+) True LOC110533017
XM_021617148.2 mRNA downstream 100471 47635370 ~ 47636413 (+) True LOC110533018
XM_036988182.1 mRNA downstream 144641 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA downstream 144641 47679540 ~ 47694148 (+) False LOC110532243
TU921250 other upstream 1398927 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 3081582 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3338618 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5185873 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 5202221 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 447102 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1010555 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1424850 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1468420 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1580238 49115137 ~ 49115618 (+) True G813139

Expression Profile