RNA id: TU923683


Basic Information

Item Value
RNA id TU923683
length 1281
lncRNA type antisense_over
GC content 0.45
exon number 7
gene id G811877
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47720794 ~ 47731492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TtttttacacaatacattttagcAAAGGTGGCAACTAGAGATGACGttcaggagcttgcagggatttgtagtcttacatgatgtctactttgacgCTAATTAGCCAttttgaatctgagagtaaatagagtacattgataaaagtcacattgtctgagagagatttacatgattatcaaaacgtcacgccggggtaagcctacacaaacaGCCCTTATTTTGAAGTGTTTGTAAAATTCCCTTTGggaaacatttatggtggaaaaaggattggaaccatttccctgtttgacctcaAGGTTTTCTCAGTATTATGTgcattatgacacctccactgtggggctatAGAGggctatctatctctatgggtgTATCCCTGTGTATTATGGTGGTCTAGCCATGCTGTTGGCACTCACTTTTATAGTGGCTGACCAGTTCCTGCAGGTTGTTGAAGGTGATGCGTGGAGAGATGTAGAAGCCACCGTTATCCAGTGTACGGATCTTGTAATGCTTGACTGTGTCTCCTGATTGGGAATCACTGTCCCTTACGGATAAGGAGTAGCTGCCCTTGGTGGTCTCACTGTCACGGATCATGAACGATCCCGTTTTGTTTGCTGATGCTAGCAGCTGCCTCTCTGCATCTTTCCTGCTCACTCCTTTATAGAACCACTCTTCGGTTTCAAGTCTGTCTATGGCTACATAGTTATTGGGGATGTAGCCTTCCTTGCCTGTGCTAATTAACTGTGCTCTCCACCATTCtccagatTCCTGTAAGATTTTAAGCTTGTCTCCCTTCTTGAAGTCCAGGTCTCCATCATTTACACCCTCATAGTCATACAGTGCAATGGCAATGCTCTCAGTACCATTAGAGAGGACTGGAGGGGCCACGGAGATGGTTCTGTTAGCCTTGGTCCCTGTGGTGGGGTCTTTGACGTAGTGAGTTGTCTGAGTCTGGTTCAGAGAGTCATCATTGACCACACCTTTGCTGCTGGGATCCTGCTGCTCCTTGGACCCCACACAGCCCATAGTAGAAGAACCTCGTTCCAACCAGCTGTATATTCCACGTATGTTCTGCTATTTGGTCCTCAACGCTGAATTATTTGTATTCTTTAGAAAAACGCTCCTTTTTCTTTTATATCGGCTCTTCCATCCCGGGATTAAAGTTCAGATAGAATGAGCTGAAGGGTGCGTACTAGTTGTATACGAGGAAGTTAGTGCCTCACATCTGACTGTGCACGACGAactttctgtctctgtcacatCTATCATAATCTCGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923452 lncRNA upstream 145433 47572274 ~ 47575361 (+) True G811690
TU923435 lncRNA upstream 178962 47541438 ~ 47541832 (+) True G811674
TU923429 lncRNA upstream 185895 47534659 ~ 47534899 (+) True G811668
TU923240 lncRNA upstream 309568 47409448 ~ 47411226 (+) False G811492
TU923862 lncRNA downstream 171892 47903384 ~ 47927961 (+) True G812051
TU923865 lncRNA downstream 181441 47912933 ~ 47919012 (+) True G812052
TU923928 lncRNA downstream 198623 47930115 ~ 47930416 (+) True G812109
TU923929 lncRNA downstream 200684 47932176 ~ 47932706 (+) True G812110
TU923945 lncRNA downstream 228504 47959996 ~ 47960219 (+) True G812126
XM_036988182.1 mRNA upstream 26646 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA upstream 26646 47679540 ~ 47694148 (+) False LOC110532243
XM_036988184.1 mRNA upstream 26646 47679540 ~ 47694148 (+) True LOC110532243
XM_021617148.2 mRNA upstream 84381 47635370 ~ 47636413 (+) True LOC110533018
XM_021617147.2 mRNA upstream 92852 47626332 ~ 47627942 (+) True LOC110533017
XM_036988190.1 mRNA downstream 254847 47986339 ~ 48023190 (+) False LOC110532248
XM_036988191.1 mRNA downstream 254847 47986339 ~ 48023190 (+) False LOC110532248
XM_036988188.1 mRNA downstream 269176 48000668 ~ 48023190 (+) False LOC110532248
XM_036988192.1 mRNA downstream 269179 48000671 ~ 48023190 (+) False LOC110532248
XM_036988187.1 mRNA downstream 272495 48003987 ~ 48023190 (+) False LOC110532248
TU921250 other upstream 1585062 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 3267717 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3524753 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5372008 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 5388356 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 250509 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 813962 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1228257 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1271827 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1383645 49115137 ~ 49115618 (+) True G813139

Expression Profile