RNA id: TU923865


Basic Information

Item Value
RNA id TU923865
length 5882
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G812052
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47912933 ~ 47919012 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TcagatatgtattttttttaacaatgtgTCAAGATGATTGGCACTTCTGTTTTCAATACTTAGTATTTGTACTATTTATTTTACACAGTCTCATCTTTttcaagggtgccaatcatttggGACTTGACTGTATGTGCCTCCTAGCCTcaacacaaagacacagacaggacaactctattgtactgtatattactctATTGTACCGTATattactctattgtactgtatattactctATAGTTCTGGAACTATAGCTCAAACAGAACACCTATCTATCTGTAGGCTGGAAAACAACTTCAAGTCCTCAGGTTACAGGGGAATGCCTACTATTGACATCACAAACAAACACTCTATCGATTTGGTTGTTATTTGTTATATCGTTCTCAGTGTATCTTTTTCCGTAATGTACACATTATCAGTGGCTGGACTTTCTATAGTGACATTGATATTCTATTACTCCTTGCACCAGTGCAGTCTTGTCTTTGTGGCAGATTTAAGGGGGAGAGGCCACGACCTATCCCAAAATGCATTGCCACTAACAACCCTCAATCAGTCAATAAAATGGTAATTGATAAGATATCCTGGGCGATAAAACTAAAACAGAGTATGCCAGAATGCCTCAGAGAAAGACTGCACATTGTCTCTGAATATACGAACAATCTGAAATGTGGCGTCCTTGTGACAACAAAGTAGCAGAAGAGTGACGGCGAAAGACATACAGTACTTCAAACAGTCCTGAAAAAAAGATGCTTAATTAATTACTCAATTACCATAGTGCTGAACCTTGTGACCTCTCCATAATTTATTTACATCTTTGAAAAGTCAATTAGTCAATCGGCCATTACACGGCTGTTGACGAGAGACTGTGGGACGTCTGATCTGATCGAAGCACAATCAAAGTATTGATCAGCGAGAAGACACAGGCTGCATCTAAGAAAATGAATATGAAGGTTTTTCACGCCAGTGCAATTACAATATTACTCAAACGAAGCTCTATTAAAACACCCAGCGTGAAACCTCTTATGTGGGCCATCCATACCATCCAGTTGTATCCTGGCAGGGTCAGGGGCTCAGGCCTCTCTGTTGCTCCAGACTAGCCCCTCGTTTCCCCTCCCCATTCCCCGGGCCGTGCCCATCCGCCTGAACACGAGAACAGGGATCAATGTTGAGGAGGTTTGTTTCAATCAATTAAACAGACAAGTGGCTGCATTCATTTCCAATAACCCCATCCAAACCCTACAcaactctctctgtctgcagAAACACAGGAACTGTAGAATAGTCCAGGCGCTCTCCATTTTACATGGATACATAATGAATAACTGCATCGCTAAAATCACAGCTGGACTCCACAGGGTAAATTATTTTGGATcataaaagcatttattttttcTCGAAGTAAAATTTATGCTGACATTTTCATTGTGTTTTTGTAATAATTAATGCAACATGGAACAAATCAAATGGAACAACGTGGATAGAAAACAGTTTCACTGATTATAATTGCGATAGGCTATAGTTTTGCATGTGTATTGTGAAGAAGGCCTACACAGCATTATCATAGTAGCGTATCGTCCAAGTACCCAGAATTGCCAGCTGCTTGAACTGATGTTCGGTCCAGACCCTGGCCATTAGTTCACAATATGAACTGGCCATGCTTACTGGAAATTAACACGTGGGCTAATTAAAATTCAGCGGAGCTGTAAAGACGGAGGAAGTAATTAAAGGAACAAGGGCACTCTGATGGAAGCATCTTCTTGTCAATGACGGCCGCGAAAATGTCTACTGCTCTACTGTTTcctcgccacacacacacacacacacacacacacacacacacacacaagtgcgcaaacacacacacccacatatgcgcacacacgcacgcacacacatttgTGCGCCAGAACAATTACTACATTGCAGAGGTTTATAGTTGTCGTAATATTATCGTTACATAGATCCTCTGTTTATAAGGTCATAACGTTTATAGCTTATGCTGTAATAATATGGTAATTATAGATGGGAAAGAATAACTATATTTTATCAGAATGATAACCCAAGGTAACTAGGATTACACAATTGCAAATTAAATGTTTCCCAAAAGTCATTATGTTCCAGAACTGACTTTACTTGATATTTTAACTTCAAACAATGTTTTGTTATGAAGTGTCAAAATAAATGATGACATGGTCATATGTTAGGTCTTTTTCTCATTCATAAACCTCACCATCCTCTGCAACATAGGGCTATGTAAAATAGCACTGCCAAAGGGGGAATAGTATTTCTCAGAGGCAATATAAGATTCAACAATGTGCCTGGACACCTTTATTATACTATCTATGGTTGTAACAAAATAGAGCCAGAATATAGCCAGAATATAACCAGAATATAACCAGAACATAGCCAGAATAGAGCCAGAATAGAGCCAGAATAGAGCCAGAACATTGTCAGAATATAGCCAGAACATTGTCAGAATATAGCCAGAACATTGTCAGAATATAGCCAGAACATTGTCAGAATATAGCCAGAACATAGCCAGAATAGAGCCAGAATATAGCCAGAACATTGTCAGAATATAGCCAGAACATTGTCAGAATATAGCCAGAACATTGCCAGAATAAAACATAAGAATATAAATGAATGGCAAAAGCAGGACAAGGGCAACCTAACCTACTTCAAGCGGAGCCTAGCACAGTTGTGTCTGAGTGGATGTACACTTTCACTTAGTGTTTGCTTGTTCTTGTGATTGTCTGtttcaggatgtgtgtgtgtgtacgagccCATGCTTGTGCATGCATGATGTGTGTGGGttttctctttgtgtgtgtggccTAGCGTATCGTCCTGCTGGTCCCCTATAAGCGGGGTGTAATTGggagcagcagcagtgtgtgtagTGCTGCAGACAGGGTGTCAGGACAGCTGTGGAGCacgagaagaggaggagaggaaaggaggagtggcaggtgagaggaggagacacGGCAGGCACAGAGGAGGACCGGAGTAGCAAGTATCCCTGATTAAACAATGTTTTAAGTGAACATACATCTCAGGGTGAGAGGAGTGCGACGCCAGGGAGAGTTAGCTTTACACTGCCACAGCAAGCTGGAACAGCTAAGAACTGGGACTGCTGGAGAGAAACAATGAAAGAGAGAAACGGGAGAAAGAAGGTAGAacgagagcagggagaggagaggaagagaggaaattgGAGAGGGATGGGTGAAAATTAAAAAGATggggatgagagagaaggaggaaacgAGTGAACAAGAGAGGAGATGGAGTTGGAAAGAAGCCAGggaagtgtgtgagtgagagagagccagTGGACTGAAAATGAGTCCCTAAAACACATAAAGAGTCATGTCTTCTGAGCTGTTCCAGCAGCCGCTGGGTGGTTTGAAATAATTGCTCCTCTTTTCGCGGGAAAACTATTACAATGTCATGGTCAGATTATTATCTATAATGGTAGGAATGTAAAGTGGTAGAATGTGCATGGGCTCAGTGttattagcagcagcagcagcagtaacagtgggagtagtattaacatgagtgGGAAGGAGAGCATTTTGAGTTATTTGCATGATTACTGTCCGGACCCTACTGATCTGCCTGTGGCCTGCTGGCCAGCcggacagacaggcagccaggcTGAGGGGCTCATTAGTGGGGAAATACAGAGATTGTGTGGCTCTGTAATGGGAGCAATAGGGAACACCGGTCTGGAGCAGAGCCGAGCAGCAAGCCAAGTGCCCAAGGTCCCTGAAGGACACTTGAAGGTAAGGGGAATGACTGTAGGGTAGGAGAGAAACCAGCGAGCAGAGCTAGGAGGAATAGAGGGGAAAACATGAACTCACACAGGATGGGTTAAATTAGAGACCCTCGAGAGTACTGCAGTGGTGCGTGTGCCAATAGAATTCTTGGGAtaatgtgtatttgtgtttgcTTCAATTATGTATATTGTGGGAGAAGGTTTATAAAGTTAGGTCATCCACAGACTTTTTTTTGTGGAACATTTGAGAACCAAACCTATAATTCAATCAAATATTTTTCAGTTACACTCAAACAGATTGAAAGTTGTTGGTCTTGCTCTGTCAATACGTAGCGAACGCAACATCGGACTTAATCTTCCCCTCATTTACACGCATACCGTACCTTGATAAGAACTATTCCCAAGTGGCTGACTTCTTTCTTCGCCTTATCATACAGTACTCTGTCTCAAGGCAACCCAGAATTGCTGATTTGAATCACcttgcctcccctctctctcatgtaCAGCTTTAGAAGACAAGGGGAGATTAAATGCAATAGATTCAAATCTATTCGATGGCCTTAACTGGGTTCATCCTCTGTTGCCCTTTGTTTCTGGGTGACACCAGTTAAACACAGCACATTTAATACAACCTCTTTCTCTTTAGAGAGACGTGCAGGGGACTGTTGGGCTGACAAAGGGCTGTCCGACTCTCACAACAGAGAGCGTGTCAGCCAGCATATTCTTCCGCCTGAGCTCCTTTCTGAGTTTAACTGCATTGGATTTTTGTTTGGCGGCAGAGTGTATATCAAGCACTGCTTTGTGAGCCTGCCGGTGATGGTGATGAAAGCATGGCTAAAATATCTAAGTGGTTGTACTTCGTTAAGGGAGGGGTGGGAGCGATGGTGGGAGAGGTGTGGGGAGGGGCTGGAGGGGGCAGTAGGATCGTGCATGTGGTAAGAATCAGTCTGCATAAAGTAAgcatagggagaggaagagagagagagagagagagagagagagagagagagagagagagatgtgaagatGGGTCTGCTCTGCTGCAGTTTGGCAGCCAGTTGTAATGCGTATATATGACATCATTCTCTGACAAAGTGCGAGGACGTCATCAAATCAAAGGTGGTTTTCTGTTAAATGTAGAGCACAGATGTCTGATGCTTTTACGGAATTCCAGTAGTCCTTCACCTCcacattaattttttttttatgtcactgccctgtctgtctctctctggctttctctcttTGTGCTGGTGAGTTAAGAGCCTGACCCGGGTACTGCTATCATGGTTATTAGGAGTTGAGTGGATCCATTACTTCCTCTGCTCTGCTGTGTCTGAGTGGCAAGAGGAAAGGCAGCTTTCCGCTGGGGTTAACCAGGGCGAGTCCCAGACCCGGCTATCGTCCCGGCCTCAGAACAGCGGTGACGACGCAGCCCGAGATTTGCCTTTAACGGCACCGTCTGTCCCCCTCCCTGAGCCGTAaataattttactgcaagaagGTGCAGGTTAAAATCAGCCGCGCCGCAAAAGAGAGGCTCAGCACTCTCATCTCAGACTGTCAAGGCCAACAAGACAAATGGCGTGTCCAAGAGTAAACTGCTTTTAAGCAAATATATAGCCCAATAACTACATGTACtttagtttttgttgtttttaagcGTCTTTGAGATGATCTGTATGACGAAAAGCTCTAAGTAAAATAAATCTTCTTTCTTTTTTAAGCAACATTACATTGACCCTAACACAACGTAGCAGGCTTAAAATAAATGCcagaaactagatcccctacatactggtcttgacGAGAAGAAAAACAACTGGAgtgggaggttctcttctgcactgctcaaccaatccagtaaatgtggaggaggagttaagatggagtgtcaTCTTGTTAACTTACAAAAGTCACATCGAAGGCTTTCTTTCCATATCGGTTGTTGGGGACTCGGCAGAGGCTACATTGACCCAGAACTGAGAGGATTTTTAAGTTCCAACCCAGTCACACACAGGATGCGCAGGAGAAGAGAAATAATCAAACCCAATTTACATCTGGTGGCTCTAtgcaaagacagacagaaagagataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923681 lncRNA upstream 145938 47707362 ~ 47766995 (+) True G811875
TU923683 lncRNA upstream 181441 47720794 ~ 47731492 (+) True G811877
TU923452 lncRNA upstream 337572 47572274 ~ 47575361 (+) True G811690
TU923435 lncRNA upstream 371101 47541438 ~ 47541832 (+) True G811674
TU923429 lncRNA upstream 378034 47534659 ~ 47534899 (+) True G811668
TU923928 lncRNA downstream 11103 47930115 ~ 47930416 (+) True G812109
TU923929 lncRNA downstream 13164 47932176 ~ 47932706 (+) True G812110
TU923945 lncRNA downstream 40984 47959996 ~ 47960219 (+) True G812126
TU923946 lncRNA downstream 41510 47960522 ~ 47960747 (+) True G812127
TU923921 lncRNA downstream 105210 48024222 ~ 48026179 (+) True G812102
XM_036988182.1 mRNA upstream 218785 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA upstream 218785 47679540 ~ 47694148 (+) False LOC110532243
XM_036988184.1 mRNA upstream 218785 47679540 ~ 47694148 (+) True LOC110532243
XM_021617148.2 mRNA upstream 276520 47635370 ~ 47636413 (+) True LOC110533018
XM_021617147.2 mRNA upstream 284991 47626332 ~ 47627942 (+) True LOC110533017
XM_036988190.1 mRNA downstream 67327 47986339 ~ 48023190 (+) False LOC110532248
XM_036988191.1 mRNA downstream 67327 47986339 ~ 48023190 (+) False LOC110532248
XM_036988188.1 mRNA downstream 81656 48000668 ~ 48023190 (+) False LOC110532248
XM_036988192.1 mRNA downstream 81659 48000671 ~ 48023190 (+) False LOC110532248
XM_036988187.1 mRNA downstream 84975 48003987 ~ 48023190 (+) False LOC110532248
TU921250 other upstream 1777201 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 3459856 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3716892 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5564147 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 5580495 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 62989 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 626442 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1040737 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1084307 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1196125 49115137 ~ 49115618 (+) True G813139

Expression Profile