RNA id: TU923921


Basic Information

Item Value
RNA id TU923921
length 1958
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G812102
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48024222 ~ 48026179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGTTTGtctaaacgtttgactggtactgtatgtacacataACCAAACAAATGACAAATGCATGTGACATATGTCCCACAgttctctcttactctctgtatctcctcctgTATCCTCTTGTGTCTTCCTCAAACAAACACATTATCTCATCCTCTTACTCAGCCAGCAGAACCCACAACTATATAGGAACAGACACATATTTCCGCTTTTTTAATTCCAGGGGATTCGATGAATATGACTGAAACAAGTTTTTTTTCCACAGATCAAAACACAGACACTGGCACCGAGAACATTAGGCCGACAAACATGGGCACTTTTGTACCCAACACATTGAGGGATTTAATTGTCACCGGGTTCTTCATAGAACAGTATTAAAGAAATGAGCAAGGTCACGCAAAAAGAGACAGGATTAGAAGACAAACTATGTAGGAGAGAGGATTGTAGGACAAAGGATCAGTTTCCATGGATACTGGTTGAGTCATAACTCAGCAGCActgctgtctgtcttgtctggttTGTGTGCAGACATTACATTTATGACCCTTGGCAAATAAACGCAGGGACACATTAATGAACATTAAATACTCATAAAGATCTCACGCTCAAATACACATACTTACAGAAAACCAAACACAGTGTGAATGAATGTACTGACAGAAACAACAGTGGATGTTGTGACCATAatgataatattttttttttaaatgttgagcCATTAGTAGCTATGATATCGAACATTATCAGTAGCCATTTTAATCTACATTGACGGATCTTATACATCCATTAGGAtcaccttctctttccatgacatagactgaccagttgaatccacgtgaaacctatgatcccttattgatgtaacctGTTAAATCCAaaattcaatcagtgtagatgaaggggaggagacaggttaaagaaggatatttaaaccttgagacaactgagacatggaatgtgtatgtgtgccattcacacATATgcaagggtgaatgggcaagacaaaatatttaagtgcctttgaatggggtatggtagtaggtgacaggtgcaccggtttgagtgtgtcaagaaatggtccaccaccaaaaggacattcagccaacttgacacgactgtgggaagcattggagtcaacataggccagcatccctgtggaacgctttccacaccttgtagtccatgccctgatgaattgaggctcttctgagggcaacaggaggtgcaactcaatattaggaaggtgttcataatgttttgtacactcggcgTATTATGTTTTCAATAATAACTATTACCGATCATGAGCTTTTTAATCCCACCCTTCAgatactctcagcccatcccacctatctcagTAGACAACCCTCTTTTGATTTCCACGtgacatatatttttcaacttgCTTACATGAATTTTGAACCTTTCTAATTGCATAGTATCCACAGACTGTAAATTAAAGATTATTATTTTTCCTAAGATTATTATTATAtcgttgattggttggttgtggctttccaaatcgctcaacactgctatttgtaaggttaaTATTAAATGAATCTACTGATGTTTCAGCCACAGGTttagtaaacaacaggtttagactaacagtgtaatgcttacttacgggcccttttCTAACAATACAGATTTaaagacaatttttttttaaagaagctttTTACATAATGAATAACAAACGAGTAAAAAatgacatggctatatacagtgagtaccagtCCTGAgccgatgtgcaggggtacgaggtaattgaggtagctatgtatagagcctttggaaagtattcaaaccccttcactttttccacattctgttacatttcagccttagtctaaaattgatacaattgtttttttcctcaccaatgtacacacaatacgtgtttttagacatttttgcaaatgtattaaaataaaaaactgaaatatgacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923946 lncRNA upstream 63475 47960522 ~ 47960747 (+) True G812127
TU923945 lncRNA upstream 64003 47959996 ~ 47960219 (+) True G812126
TU923929 lncRNA upstream 91516 47932176 ~ 47932706 (+) True G812110
TU923928 lncRNA upstream 93806 47930115 ~ 47930416 (+) True G812109
TU923862 lncRNA upstream 96261 47903384 ~ 47927961 (+) True G812051
TU923922 lncRNA downstream 1350 48027529 ~ 48027987 (+) True G812103
TU923920 lncRNA downstream 3136 48029315 ~ 48032118 (+) True G812101
TU924208 lncRNA downstream 251998 48278177 ~ 48284725 (+) False G812382
TU924209 lncRNA downstream 251998 48278177 ~ 48286426 (+) False G812382
TU924210 lncRNA downstream 251998 48278177 ~ 48281763 (+) True G812382
XM_036988190.1 mRNA upstream 1032 47986339 ~ 48023190 (+) False LOC110532248
XM_036988191.1 mRNA upstream 1032 47986339 ~ 48023190 (+) False LOC110532248
XM_036988188.1 mRNA upstream 1032 48000668 ~ 48023190 (+) False LOC110532248
XM_036988192.1 mRNA upstream 1032 48000671 ~ 48023190 (+) False LOC110532248
XM_036988187.1 mRNA upstream 1032 48003987 ~ 48023190 (+) False LOC110532248
XM_021615974.2 mRNA downstream 78153 48104332 ~ 48158964 (+) True ntsr1
XM_021615978.2 mRNA downstream 198468 48224647 ~ 48259337 (+) False snphb
XM_036988194.1 mRNA downstream 210537 48236716 ~ 48259337 (+) True snphb
XM_021615992.2 mRNA downstream 360588 48386767 ~ 48394099 (+) True LOC110532257
XM_021615993.2 mRNA downstream 374458 48400637 ~ 48404003 (+) True LOC110532258
TU923963 other upstream 41921 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 1888490 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 3571145 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3828181 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5675436 42346176 ~ 42348786 (+) True G805600
TU924562 other downstream 519275 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 933570 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 977140 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1088958 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 2770035 50796214 ~ 50800381 (+) False G815428

Expression Profile